Medicago truncatula (barrel medic): 25495837
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Entry
25495837 CDS
T01716
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
25495837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25495837
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
25495837
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
25495837
NCBI-ProteinID:
XP_013451542
UniProt:
A0A072UIC2
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All DBs
Position
6:complement(10209697..10218530)
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AA seq
882 aa
AA seq
DB search
MNVDHDQPPPTATATAALQTLTSGPLSSSVASLAASSRCIPSERDFFFYRNFNEFKLPID
EISRESQSMLEAIGVASNSPFPGDLDDGYDWLVNVNDDVLERFDVANDEFREYRRIQEED
AKNGNGNGRMNGSEAMMVDDGFEIVYGKKKKGGRGKVVGVEDSEISVAEGVKVAMKDKRT
VGGKAKIPFHIPTIRRPQDEFSIIVNNANVPFEHVWLQRSDDGQKFVHPLEKLSVLDFVD
KDPENIVPQKPPSLESTPFKLVEEVKDLKEMAAKLRSVNEFAVDLEHNQYRSFQGLTCLM
QISTRTEDFVVDTLKLRIHIGPHLREVFKDPSKRKVMHGADKDIVWLQRDFGIYVCNMFD
TGQASKVLKLERNSLEHLLNHFCEITANKEYQNADWRLRPIPDEMLRYAREDTHYLLYIY
DTMRINLCSLPKAPESSDTPLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQ
QLAIVSGLCEWRDIVARAEDESTGYVLPNKTVLEIAKQMPVTTNKLRRLVKTKHPYLEHN
LDSVVTVIRHSIQNAAAFEAAAQQLKEGNATTGSDAVPVTTEDPAPQTQNPKESFQHQDT
DVQIKLKPNNVTSELPRESLTIPEQTRDANVGALSTLKGNGATVQVLKKPGGAFGALLGN
SASKRKLGLDKKGKEEIKLEQIRSSVTLPFHSFSGGSETSKPVVETPSVADQQKPVTDPA
STSALDEIIMLDTDTGVEEDVEQNNNLENPTEQTEKNPSASTSDEDEPKSLSELSANFKK
CFQSNKQNNRIRKPKKTEQASGLLQLTPYDYEAAMNHVKFGEKKKNPSSQNCDGRAEKED
ASGKKKRSTIGDGQPSDLPKQFQQGRRRAAFPASGNRSATFR
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtcgatcacgatcaaccaccgcctaccgccaccgcaaccgccgcactccaaacc
ctaacctccggtccactctcatcatcagtagcttcgctcgccgcttcttcacgttgtatc
ccatcggagagagatttcttcttttaccgcaatttcaacgaattcaaactcccaattgat
gaaatctcgcgtgaatcgcaatccatgcttgaagcaatcggtgtagcttcaaattcgcct
tttcctggtgatcttgatgatggttatgattggcttgtcaatgtgaatgatgatgttttg
gaaagattcgatgtcgcgaacgatgagtttcgcgaatatcgaaggattcaagaagaagat
gccaagaatgggaatggaaatggaagaatgaatgggagtgaggcaatgatggtggatgat
gggtttgagattgtttatgggaagaagaagaaaggggggagagggaaggtggttggggtg
gaggattcggagatttcggtggcggagggtgtgaaggtggcgatgaaagataagaggacg
gtgggcgggaaggcgaagattccgtttcatataccgactattcgaaggccgcaggatgag
tttagtataattgttaataatgctaatgtgccttttgagcatgtttggttgcagaggagt
gatgatgggcagaagtttgttcatccattggaaaagctatctgttttggattttgttgat
aaagatcctgaaaatattgtgccacaaaagcccccgtcattagaaagcacccctttcaag
cttgtagaagaagtcaaagatttgaaggagatggctgctaagctgcgttctgttaatgaa
tttgcggttgatttggagcataatcaatatcggtctttccaaggtttgacttgcttgatg
caaatatcaacaaggactgaagattttgttgtcgacactttgaaactccgcattcatatt
gggccccatttaagggaagtcttcaaggacccttccaagaggaaggttatgcatggtgcg
gataaagatattgtgtggcttcaacgagactttggcatttatgtttgtaatatgtttgac
actggccaggcttcaaaggtgttaaaattggagagaaatagtttagagcatcttctgaac
catttttgtgagattacagcaaacaaagaataccagaatgctgattggagactacgcccg
attcctgatgagatgttaagatatgccagagaagatacacattatctgctgtatatatat
gatacaatgaggattaacttatgttccttgccaaaggcacctgaaagttctgatactcct
ctggtagaggtctacaagcgcagttatgatgtctgcatgcagctgtatgagaaagaactt
ctgacagaaaactcataccttcatatatatggattgcaaggggctggttttaatgctcaa
cagcttgccattgtttcggggctgtgtgagtggcgcgacattgttgctcgtgcagaggat
gagagcactggatatgtattgccaaataaaactgttcttgaaatcgctaagcagatgcct
gtcactacaaacaagttacggcgattggtgaagacaaagcatccatatcttgaacacaat
ctggattctgttgttaccgtcatcagacattcaattcagaatgctgctgcttttgaagca
gctgctcaacagttgaaagaaggaaatgccaccacaggatcagacgcagtacctgttacg
actgaagatcccgcaccccaaacgcagaacccaaaggaatcttttcagcatcaagatacc
gatgtacaaataaaattgaagcccaataatgtcacatctgagctcccaagggaaagtctc
actattccagagcagactagggatgcaaatgttggcgcactctctacattgaagggaaat
ggagcaactgtccaggttcttaaaaagcctggcggtgcttttggggcactgttggggaac
tcagcttcaaagaggaagctcggtcttgataaaaagggcaaggaagagatcaagctagag
caaattagatcttcagtcactcttcctttccattcattttcgggtggcagtgagacatca
aaacctgtagtagaaactcctagtgtagcagaccaacaaaaacctgttactgatccagct
tccacctctgctctagatgagattataatgctggacaccgatacaggtgttgaggaggat
gtagagcagaataataacctagagaatccgacggagcagacggagaaaaatccaagtgct
tcaacttcggacgaggatgagcctaagtctctctcggaactgtctgcaaactttaaaaag
tgttttcagtcaaacaaacaaaataacagaatcagaaagccaaagaaaactgaacaagct
agtggcttattgcagttgacgccatatgattatgaagcagcaatgaaccatgtgaagttt
ggagaaaaaaagaagaatccatcatcccagaattgcgatggtcgtgccgagaaagaggac
gcaagtggcaagaagaagcgttcaacgataggagacggacagccaagtgatttgcctaaa
caatttcaacaaggtagaagacgtgcagcatttcctgcttccgggaatcgcagtgcaaca
ttccgctga
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