Medicago truncatula (barrel medic): 25497027
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Entry
25497027 CDS
T01716
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
25497027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mtr03009
]
25497027
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
25497027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_IFT122_1st
PEP5_VPS11_N
Beta-prop_WDR75_2nd
Beta-prop_SCAP
Beta-prop_VPS8
WD40_RFWD3
CPSF_A
WD40_like
TAF1C_beta-prop
Beta-prop_IP5PC_F
VID27
Utp12
VPS8_N
Motif
Other DBs
NCBI-GeneID:
25497027
NCBI-ProteinID:
XP_024641079
LinkDB
All DBs
Position
6:42701078..42710888
Genome browser
AA seq
909 aa
AA seq
DB search
MGIFEPYRAIGCISTGVPFSVQRLNTETFVTVSVGKAFQIFNYAKLTLVLVSPQLPKKIT
SLASYRDFTFASYGNHIAVFKRAHQVATWSSHTAKVKSLLLFGEHILSLDAQGNIFLWAF
KDIKDNLVPVGHIVLDQNFTPTCIMHPDTYLNKVLIGSEQGTMQLWNISTKKKIFEFKGW
DSPISCIVSSPALDVVAVGCTDGKIHVHNIRYDEELVTFTHSTRGSVTALSFSTDGQPLL
ASGGSSGVISIWNLEKKRLHSVVREAHDGVITSLHFFANEPVLMSSSADNSIKMWIFDTS
DGDPRLLRFRSGHSAPPLCIKFYANGRHILSAGQDRAFRLFSVVQDQQSRELSQRHVSKR
AKKLRVKEEEIKLKPVIAFDCAEIRERDWCNVVTCHTDTAQAYVWRLQNFVLGEHILTPC
PENPTPVKTCAISACGNFAILGTAGGWIEKFNLQSGIHRGAYIDMSESRSCAHDSEVVGV
ACDATNTLMISVGYQGDIKVWDFKERSLKSKLDVGCSVVKIVYHRYNGLLATVADDLTIR
LFDVVALRLVRKFEGHTDRITDLCFSEDGKWLLSSSMDGSLRIWDVILARQIDAIQVDVP
ITALSLSPNMDILATTHVDQNGVYLWVSQAMFSSSPNVDSYASGKEVVSVKLPSISSTGD
TQVAHSGEPVNDSQPKDAPAFPTQDKQIPDLVTLSLLPKSQWQSLINLDIIKVRNKPIEP
PKKPEKAPFFLPSVPLLSGEILFEPGKVSVEKDGIDNAKQMNKIKLDTPSSRFLYLLQST
KESDNFAAFTDYIKGLSPSTLDMEFRMLQILDDDNDEQEDEKRPELVPIEQLMDYFIFEL
SSRNNFEFLQAVIRLFLKIHGETIRQHKHLQEKARKLLDIQCMVWQRVDKLFQSTRCVVA
FLSNSQIHA
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgggtattttcgaaccatacagagccatcggatgcatctccaccggtgtccctttctcc
gttcaacgactcaacactgaaactttcgtcactgtttccgttggtaaagcttttcagatt
ttcaactatgctaaactcactttagttcttgtttctcctcaacttcccaagaagattact
tctcttgcttcctatcgtgatttcactttcgcttcttatggaaatcatatcgctgttttt
aaacgtgctcatcaggttgcaacttggagcagtcatactgctaaggtgaaatccttattg
ttgtttggtgaacatattctcagtcttgatgctcagggaaacatcttcttgtgggcattc
aaggatatcaaggacaatcttgttcctgttggccacattgtgttagatcagaattttacc
cccacctgtattatgcatccagatacttaccttaataaggttcttattgggagtgaacaa
ggcactatgcaactttggaatattagcacaaagaaaaaaatatttgagtttaagggatgg
gattcacctatctcctgtattgtctcatcccctgctctagatgttgttgctgttggctgt
acggacggaaagattcacgttcacaacatccgttacgatgaagaattggttacttttaca
cattccacccgtggttctgtcactgctttatctttcagcactgatggacagccccttctg
gcttctggaggttcatctggtgttattagcatatggaatctggaaaagaaaaggctccac
tcagttgtaagagaggctcatgatggtgtgataacttcactgcatttttttgctaatgag
ccagtgctaatgagctcatcagcagacaactctattaaaatgtggatttttgacacaagt
gatggtgaccctcgtcttttgcgctttcgaagtgggcatagtgctcctcccctctgcata
aagttttatgctaatggaagacacattctttctgctggccaggatcgagcttttcgcctt
ttctctgttgtacaggatcaacaaagtagggaactttctcaacgccatgtttctaaacgc
gctaaaaagctgagagttaaggaggaagaaataaagttgaagcctgtgattgcgtttgat
tgtgctgaaattagagaacgtgattggtgtaatgtggttacctgccatacggatactgcc
caagcatatgtgtggagacttcaaaattttgttcttggagagcatatattgactccatgc
cctgaaaatccaacgcctgtaaagacttgtgccatcagtgcttgtggcaattttgccatt
ttagggacagctggtggttggatcgaaaagttcaaccttcaatctggaattcacaggggt
gcttacattgacatgtcagaatcaagaagttgtgctcatgatagtgaagtggttggagta
gcttgtgatgcaacaaatactctcatgataagtgtgggatatcaaggagatataaaggtt
tgggatttcaaagaacggagtcttaaatccaaattggatgttggttgttctgttgttaag
attgtttaccatcgttataatggtctcctggctacagtagcagatgatttaacaattaga
ttgtttgatgttgtggctctcagacttgttcgtaaatttgaaggtcacacagatcgtata
acagatttgtgcttcagtgaggatgggaaatggcttctttcgtccagtatggatggaagt
cttagaatttgggacgtgatcttagcgagacagatagatgctattcaagttgatgtgcct
atcacggcattatcactgtccccaaacatggatatattagcaactacccatgttgatcaa
aatggggtatacctgtgggtaagccaggcaatgttctctagcagtccaaatgtcgattca
tatgcaagtggaaaagaggttgtgagtgtcaagttgccatctatctcttccacaggagat
actcaagttgcacattctggtgagccggtgaatgactctcaacctaaagatgctccggct
ttcccaactcaagataagcaaatacctgatttagttacactttcattgcttcccaagagc
cagtggcaaagcttaatcaatttagacattataaaggtacgcaataaacctattgagcct
ccaaaaaaacctgaaaaggctccattcttcctgccttcagttccattgctctctggggaa
atattgtttgagcctggaaaggtatcagtagagaaggatggaatagacaatgcaaaacaa
atgaacaagataaaattagatacgccatcatcccgttttctgtatcttcttcaatccaca
aaagagtcagacaattttgcagcattcactgattatatcaaaggattatctccatcaact
ctggatatggaattccgaatgcttcagatccttgatgacgacaatgatgagcaagaagat
gagaagagacctgagttggtaccgattgaacaactcatggattattttatttttgagctc
tcctccagaaataattttgagtttctacaagccgtcatcaggctatttttgaagatacat
ggcgagacaattcggcaacataaacacttacaagaaaaagcaaggaaactcctagatatt
cagtgcatggtatggcagagggtagataagttgtttcaaagtacgaggtgtgtggttgct
tttcttagtaattcccaaattcatgcttga
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