Medicago truncatula (barrel medic): 25497809
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Entry
25497809 CDS
T01716
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
25497809
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
mtr01002
]
25497809
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
25497809
03036 Chromosome and associated proteins [BR:
mtr03036
]
25497809
Peptidases and inhibitors [BR:
mtr01002
]
Metallo peptidases
Family M1
25497809
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
25497809
Coactivators
SAGA/TFTC/STAGA complex
25497809
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
25497809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
HEAT_2
Peptidase_M1_N
PhoD_N
DUF6183
PHD
Motif
Other DBs
NCBI-GeneID:
25497809
NCBI-ProteinID:
XP_039683553
LinkDB
All DBs
Position
7:10449017..10464421
Genome browser
AA seq
1392 aa
AA seq
DB search
MAKPRKPKPEDPKPENSGAVVQHQKLCLSIDMDKRLVYGYTELKIAVPEIGIVGLHAENL
GIESVWVDGEPTEFEYYPHQYSQNDDEKRWSSVTSPSSAADAAVSVYLSSLEKELVPNLL
INCFKPSKTETEQQQKEHEKEQPVTENGFHSAAAAEPPKQNVRLVRINYSIEKAETGVHF
RDSVLHTDNQIRRARCWFPCIDDNIQQCCYDLEFTVAHNLVAVSTGSLLYQVLSKDNPPR
KTYVYKLDVPVSARWISLAVAPFEVLPDHQFGLISHMCLPPNLAKMRHTVEFFHSAFSCY
KDYLSVDFPFDSYTQVFVEPEMVVSSLSLGASMSIFSSQVLYDEKVIDQTIDTRVKLAYA
LARQWFGVYITPESTNDEWLLEGLAGCLADFFIKKHLGNNEARYQRYKANCAVCKADDSG
ATILSCPASCKDLYGTQCIGLYGRIRAWKSVAVVQMLEKQMGPESFRRILQAIVTRAQDK
TRCVKTLSTKEFRHFANKVGNLERPFLKDFFPRWVSSCGCPDLRMGFSYNKRKNIVELAV
LRGCTALQTSSTAVLDINPDSENRDGDSGWPGMMSIRVYELDGMYDHPILPMAGEAWQLL
EIQCHSRLAARRLPKSKKGVKHDGSDDNGDVPPVDTRSSSTESPLLWIRADPDMEYLAEV
HFNQPVQMWINQLEKDKDVIAQAQAIAALEASPQLSFSVVNALNGFLTDSKAFWRVRIEA
AFALANLASKETDFSGLLHLVKFYKSQRFDPDIGLPKPNDFHDFAEYFVLEAIPHAVATI
RAADKKSPREAIEFVLQLLKYNDNTGNPYSDVFWLAALVQSIGEFEFGQQSILLLSSLLK
RIDRLLQFDSLMPSYNGVLTVSCIRTLAQIALKLAGFIPLDRVYELVKPFRDQKAIWQVR
IEASRALLDLEFHCKGIDSALLLFTKYVEEEPSLRGKLKLATHVMKLCQMRDGLNSNDEI
TSQTLVSLLSLLEGRMAFNNVFLRHYLFCILQILAKRPPTLHGIPRESRTLHMSLTGASN
YQRNLFVIDSDSKPLELPSSTQNLTQDLIITEGLRDALNEAPKDQTVEAPKEVHVEVLKD
VPLETSKEDLTGLPPEAPIEAPNEISKETDTVSNSHERKRLFKIKVKQSSATSRADTDNQ
LVERSLGGRNETDHGASSSVSVDAPQRNFAETVSISNHNIEEVNSCYDPGSRMTASIGSA
KILSDGDELVKELQCTADSSVVYSQVQPEDPSPSSIIQDNNIDVDARRFASLQTLSVTRF
DQAGESCGKEVPARGKHKHKDKDKKRKRESHKGQQNDPEYLERKRLKKEKKRKEKELAKL
LSNEAKRSSIDLSCKKEEPEVNDAKQLKSVEPSCYNSVSEIGRVDPKPVPPEGTSGAPKI
RIKIKNRMLSKS
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacctcgcaagcccaagcccgaagacccaaagccagaaaactccggcgccgtc
gttcaacaccaaaagctctgtctctcaatcgacatggataaacgcttagtttacgggtac
actgaattgaaaattgcggtacctgaaattgggatagtaggtttacatgcggagaattta
gggattgagagtgtatgggttgatggtgaacctacggagtttgagtattatcctcatcag
tattctcagaacgacgatgaaaagagatggagttcggttacttcacctagctctgctgct
gatgctgctgtgtcagtgtatttgtcttctttggagaaggagcttgtgccaaatttgtta
attaattgctttaaaccttccaagactgaaactgaacaacagcagaaggagcatgagaag
gagcaacctgttactgaaaatgggtttcattccgcagccgctgccgagcctcctaagcag
aatgtgagactggttcgtattaactatagcatagaaaaggcagagacgggagttcacttc
agagacagtgttcttcacaccgataatcagataaggagggcaaggtgttggttcccctgt
atagatgacaatatacagcaatgctgctatgacttggagttcactgtagcacacaacctt
gtggctgtcagtactggaagcttgttgtaccaggtcttaagcaaggacaatcctcctcgg
aaaacatatgtctataaattagatgttccagtttctgcaaggtggatatcattggctgtt
gccccgtttgaagttctgcccgatcaccaatttggcctcatatcacatatgtgtttgcca
cctaatctggctaaaatgcggcatacagtggagttcttccatagcgccttcagctgctat
aaggattatctttctgtagatttcccatttgactcgtatacgcaagtctttgtagagcct
gagatggtagtttcatcattgagtttaggagcctctatgagtatctttagttctcaagtt
ttgtatgatgagaaggttattgaccagactattgatactagggtaaaacttgcttacgcc
cttgcaagacagtggtttggtgtatatattactccggagtcaacaaatgatgagtggctc
ttggaagggctagctggttgcttggcagatttttttattaagaagcatttgggtaataat
gaggcacgataccagagatacaaggcaaattgtgctgtttgcaaagctgatgatagtgga
gcaacaattttgagctgtccagcttcgtgtaaggatttatatggaacacagtgcattggt
ttatacggaagaataagagcatggaagtctgtggcagttgttcagatgttggaaaagcaa
atgggtcctgaatctttccgcagaattttgcaagctatagttactcgggctcaagataaa
acacgttgcgtaaaaacacttagtactaaggagtttcgacattttgctaacaaggttggg
aatcttgaacgtccttttcttaaagatttcttcccccgttgggtcagttcttgtggatgt
cctgatttaagaatggggttttcctataacaaacgaaagaatatcgttgaattagctgtg
ttgagaggatgcacagcattgcagacttcaagtacagccgttcttgatattaatccagat
agtgaaaatcgagacggagattctggctggcctggtatgatgagtatccgggtgtatgaa
cttgatggtatgtatgaccatcctattctaccgatggctggagaagcatggcagcttttg
gaaattcaatgccactcaaggcttgctgctagacggcttccaaaatcaaagaaaggtgta
aaacatgatggctctgatgacaacggcgacgtgcctccagtggatactcgctccagcagt
accgagtcccctttattatggatcagagcagatcctgacatggagtacctcgctgaagtt
cattttaatcaaccagttcagatgtggattaaccaattagagaaggacaaagatgttatt
gctcaagcacaagcaattgcagcccttgaggcctcaccccagctatcattttctgttgta
aatgccctgaacggttttcttaccgactccaaggctttctggagagtaagaatcgaagca
gcatttgcattggcaaatttagcatccaaggaaactgatttttctggtctactccatttg
gtgaaattttacaagagtcaaagatttgatcctgacattggactcccaaagccaaatgat
tttcatgattttgccgagtatttcgttcttgaggccattccacacgctgtagctacgatt
agagccgctgacaagaaaagtccaagagaagctatcgaatttgttttacagctattgaag
tacaatgacaacactgggaacccttactcagatgtgttttggcttgctgcattggtccaa
tcaattggcgagtttgagtttgggcaacagagtattctcctattgtcatcactcctcaag
cgcattgaccggcttttacaatttgatagtctcatgccaagctacaatggagtcttgact
gtcagttgtatacggacgttggcccagattgccctaaagcttgcaggattcattcctctt
gatcgcgtatatgaacttgtaaagccttttcgagaccaaaaagcgatttggcaagttcga
attgaagcaagcagagcactccttgatctcgaattccactgcaagggcattgattccgca
cttcttttatttaccaaatatgttgaggaggagccttccttaagaggcaagttaaaactg
gccacccatgttatgaagctatgccagatgagagatggtttgaattcaaatgatgaaatt
acaagccaaactcttgtctcgttgctaagtttactggaagggcgtatggcatttaacaat
gtctttcttcgtcactatttattctgcatattacaaatactggcaaaaagacccccaact
ctacatggaattcccagagaaagtagaacattacatatgagtcttacgggtgcatctaac
tatcagaggaacctatttgttattgattccgacagtaaacctttggaactgccaagttcc
acccaaaaccttacacaagatttgatcataactgagggtttaagggatgcacttaatgaa
gctcctaaggaccaaactgttgaagctcccaaagaagtacatgtcgaagttctaaaggat
gtgcccctggagacttccaaagaggacttaacaggattgccccctgaagcaccaattgaa
gctcccaatgaaatttccaaggaaacagatactgtatccaatagccatgaaagaaaaagg
ctattcaaaatcaaggttaaacaatcttctgccaccagtagggctgatactgataatcaa
ctggttgaacgttctttaggtggtcgtaatgaaactgatcacggagctagcagttcagtt
tcagtagatgcacctcagaggaattttgccgagactgttagcattagtaatcataatatt
gaggaagttaattcttgttacgatcctggttcccgcatgactgccagcatcggtagtgca
aagattttgagtgatggtgatgaattggtcaaagaactccaatgcactgccgattcaagt
gtagtttactctcaagttcagcctgaagatccttcaccgtctagtattattcaagataac
aatatagatgttgatgcacgacgatttgccagccttcaaacactttcagttactagattt
gatcaagctggagaatcatgtggcaaagaagttcctgctcgcgggaaacataaacacaaa
gataaggataagaaacgtaaacgcgaaagtcacaagggacagcaaaatgacccagaatat
ttggagcgaaaacgattgaagaaagagaaaaaacggaaggaaaaagaattggcaaaactg
ctaagtaatgaagcaaaaagatcctccatagacttgtcatgtaagaaagaggagcctgaa
gttaatgatgcaaaacagctgaaatctgttgaacccagttgttataattctgtatcagaa
atcggaagggttgatcccaaaccggtgccacccgaaggtacatcaggtgcacccaaaatt
cgaattaaaattaaaaatcgaatgctcagcaagtcatag
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integrated database retrieval system
