Medicago truncatula (barrel medic): 25499040
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Entry
25499040 CDS
T01716
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr00040
Pentose and glucuronate interconversions
mtr01100
Metabolic pathways
Module
mtr_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
25499040
Enzymes [BR:
mtr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
25499040
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
25499040
NCBI-ProteinID:
XP_013449629
UniProt:
A0A072U1T5
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Position
7:complement(43220036..43227308)
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AA seq
450 aa
AA seq
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MALLRHFLLSFTIVIISFVACNSNLQEDPLITTYVDDSPSYDDSDTLLFKNMIEQNTNDV
LCLDQFGVSSRSLKIVNVRDYGAKGDGHTDDTQAFKKAWEVVCSSGQSVLVAPQDYNYLL
KPIRFSGPCKSNISVQISGSLEASDNPSDYSEDQRHWLVFVEVQQLLVNGGGTIDGKGNI
WWENSCKRNKKKPCKDAPTALTFDSCKDLIVEDLTIQNAQQIHVSFQDSTNVKASGLKVS
SPGNSPNTDGIHITNTQNIKISSSIIGTGDDCISIVDGSSNVEATDITCGPGHGISIGSL
GAGKSKDFVSGVLVNGAKISGTTNGVRIKTWPGGSGSASNIKFQNIEMDNVTNPIIINQN
YCDKKKKPCKKMDSAVQISNVLYQNITGKSASDVAVKFDCSEKFPCKEIKMQNILLICEE
GEPAKALCNNVQLSYIGNVNPRCNSQKYTN
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggccctcctaagacatttcctcctctcattcactatcgtcatcatttcatttgttgct
tgcaatagcaacttgcaagaggacccacttattactacatacgttgatgattcaccttcc
tacgatgatagtgatacattattattcaagaacatgatagagcaaaacacaaatgatgtt
ttgtgcttagaccaatttggtgtctcttcacgttcacttaaaattgttaatgttagagat
tatggagctaaaggggatggtcatacggatgacacacaggcattcaagaaggcttgggaa
gtagtatgttcgtcagggcaatcagttttagtggcacctcaagattataattatctactc
aaaccaatcagattctctggtccttgcaaatctaacatatcagttcagatatctggaagt
cttgaagcatcagataatccatcagattacagtgaagatcaaagacattggcttgtattt
gtggaagttcaacaactattagttaatggtggtggaaccatcgatggaaaaggaaacata
tggtgggaaaactcatgcaaaaggaacaaaaagaaaccttgcaaggatgctccaacggct
ctaacatttgatagttgcaaggacttaatagttgaggatttgacaatacaaaatgcgcaa
caaattcacgtttcattccaggattcgactaatgttaaagcttctggtctcaaagtgtca
tcaccagggaatagtcctaacaccgacggaattcatatcaccaatacccaaaacatcaaa
atctctagctctatcataggaactggtgacgattgtatatcaattgtagatggatctagt
aacgtagaagccacagacattacttgcggaccaggccatggcatcagtattggaagtttg
ggggctggaaaatccaaggactttgtttctggagtgttagtgaatggagctaagatttct
ggaactacaaatggagttagaattaagacatggccgggaggttcaggaagtgctagcaac
atcaaatttcagaacattgaaatggacaatgtgaccaaccccattataattaaccagaat
tactgtgacaagaaaaaaaaaccatgtaaaaaaatggactctgcagtccaaattagtaat
gtgttgtaccagaatataacaggcaaaagtgcttctgatgtagctgtaaagtttgattgc
agtgagaaatttccatgcaaggagataaaaatgcaaaacatactcttaatatgtgaagaa
ggagaacctgctaaggctttatgcaacaatgttcaattgtcttacataggaaatgttaac
ccacgctgcaactcacagaaatatacaaattaa
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