Medicago truncatula (barrel medic): 25499338
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Entry
25499338 CDS
T01716
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr00040
Pentose and glucuronate interconversions
mtr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
25499338
Enzymes [BR:
mtr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
25499338
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
25499338
NCBI-ProteinID:
XP_013450019
UniProt:
A0A072U2V5
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Position
7:complement(48308957..48313179)
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AA seq
469 aa
AA seq
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MFKTICILLIISVLSSFSQLGTAMLNLTLPGTHPDPDAVAHEVHRKVNASIARREMLSGS
ACMTGNPIDDCWKCDPEWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDDDAVTPKP
GTLRYGVIKNEPLWIVFPSNMMIKLKQELIFNSYKTIDGRGADVHIVGGGCITLQFISNV
IIHNIHIHHCHPSGNTNVRSSPEHFGYRTMSDGDGISIFGSKDIWVDHCTLSHCKDGLID
AVMGSTGITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGY
IHVVNNDFTEWEMYAIGGSGEPTINSQGNRYFAPINPFAKEVTKRVETEQNKWKGWNWRS
EGDVMVNGAFFVTSGDTLEVKYEKAYSVEPQSADRIVLLTMNSGVLGNARDNNLGMWSRG
PSSNSDGVLDSGPDYTDDMSGSARVLPSSFTIVMCFLLSYRVLPLTIIQ
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaaacaatatgcatattgctaattatctctgttctaagttcattttcacaactt
ggaacagcaatgctgaacttaactcttcctggaacacaccctgaccctgatgctgttgcc
cacgaagttcataggaaggtgaatgcttcaatagcaagaagggaaatgctatctggatct
gcatgcatgactggtaacccgattgacgattgttggaaatgcgatccagaatggcccaac
aatcgtcaaaggttagctgattgtgcaatcgggtttggtcagtatgctaaaggaggaaaa
ggtggtgaattttacgttgtaacagattcatcagatgatgatgctgttaccccaaaacca
ggtacattaagatatggtgtgataaaaaatgaaccattgtggatagtgttccctagtaac
atgatgattaagctgaagcaagagcttatatttaatagttataagactattgacggacgt
ggagctgatgttcacattgtgggaggaggatgcattactttgcagtttattagtaatgtt
ataatacataacattcatattcaccattgtcacccctcagggaacacaaatgtgagatca
agtcctgaacactttggctacagaacaatgtcagacggagatggaatatccatattcggt
tcaaaagacatatgggtcgaccattgcacactctcacattgcaaagatggactaatagac
gcagtaatgggatcaacaggaataacgatatccaacaacttcatgtcacaccacaacgaa
gtcatgcttcttggacacagcgatgactacctcccagactcgggaatgcaagtcacaatc
gcattcaaccattttggcgagaaacttgtacaaaggatgccgcgatgcagaagaggatac
atccatgtggtcaacaatgatttcactgagtgggaaatgtatgccattggggggagtggt
gaaccaactattaacagtcaagggaaccgttactttgcgccgattaatccttttgctaaa
gaggttactaagagggttgaaactgagcaaaataagtggaaagggtggaattggaggtct
gagggtgatgttatggttaatggtgcattttttgttacatctggtgacactctagaggtt
aagtatgagaaggcttatagtgttgaacctcagtctgctgatcggattgttcttcttacc
atgaactctggtgttcttggtaatgcaagagacaataacttgggaatgtggagcagagga
ccaagcagcaacagtgacggcgttttagattctggcccggattacacagatgatatgtca
gggagtgcgcgagtgttgccgtcttcttttactattgtgatgtgcttcttgttgtcttat
agagtgctaccattaacaattattcaatga
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