Medicago truncatula (barrel medic): 25499736
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Entry
25499736 CDS
T01716
Name
(RefSeq) UV-stimulated scaffold protein A homolog
KO
K23720
UV-stimulated scaffold protein A
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
25499736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtr03400
]
25499736
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
25499736
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
VHS
HSBP1
Motif
Other DBs
NCBI-GeneID:
25499736
NCBI-ProteinID:
XP_013450610
UniProt:
A0A072U659
LinkDB
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Position
7:complement(55592265..55595195)
Genome browser
AA seq
625 aa
AA seq
DB search
MEEGEREGNGKGAKVRFLIEKATNSTAPDVDHRLLKAIKTVVRYSDLELRLSSQTLMDLM
KRDHSQVRYLALQIIDELFMRSKLFRTLIVENLEQLMSLSVGFRRNLPLPAPPSVASLLR
TKAIEFLEKWNVSFGVHYRQLRLGYDYLKNTLKLKFPNIQANLERIRQERKEREMRSKEI
LLNKYESLKEKFSSIKGEILSTMDEIDGCLDILHSKQELESDDILDDEELDDFRSLELQQ
LRREALNEGEKVYESGDNKVVFDALRELYKLLVTKHLVSIQEWVSVLVRVEVADNRFRDS
TLKEFIDIQNRVKSVKKRCEEAGCSFLNSSKLDGEEDFWEEGNVVSIETPSSAPDNKNKH
PDVASTSQNMSSDKLGSYAKESKSSNTDSLLHGGNQSESHPLRSKLLTKAPVVRWGSHLD
TWGSNRVFMANQRGLDLESHWGRVDDDAVIPSDIISELSVPAMPYEEKQIEIQPCRAPLR
KGGLCRRKDMKICPFHGPIIPRDDEGKPLGASPSEDMNVNITKTDLAEKLAKQAVKNVRE
TDKVAAKKREIDKQELKRAKLAKIREHNDAVLRDAALASTSRSAAFGEDDEVTNRDKKAS
LASMLKKKVTSKDRIAQKLLSSRAR
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaggcgaaagagaagggaatggaaaaggcgcaaaggttaggtttttgattgaa
aaggcaacaaattccaccgcacccgatgtcgatcaccgcctcctcaaagcaatcaaaacg
gtggttcgttactccgatctggagctccgactttcttctcaaaccttaatggatctcatg
aagcgtgatcactcccaggttaggtaccttgcactccaaataattgacgaactcttcatg
cgttcaaagctttttaggaccctcattgttgagaatttggaacaattaatgtccttgagt
gttgggtttcggcgaaatttgccgcttcctgcccctccgtctgttgcatcccttttgcgt
acaaaggccattgaatttttggagaagtggaatgtttcgtttggggttcattacagacag
cttagattaggttatgattatctgaagaatacactaaagcttaagtttcctaacatacaa
gctaatctggagaggattcggcaagagagaaaggagagggagatgaggtcgaaagagatt
ttgttgaacaagtatgaatctttgaaagagaaattttcttcaataaagggagagatactg
tctacaatggacgagattgatgggtgtttagacattttgcattcaaaacaggaacttgag
tcagatgatatcttagacgatgaagagcttgatgactttcgctctttggagctgcagcag
cttcgtcgtgaagcattgaatgaaggggagaaagtgtatgaaagcggtgataacaaggta
gtttttgatgcattgagggagctatacaaacttctggtgacaaagcacctggtttccatt
caagaatgggtttctgttctggtaagagttgaagtagctgacaatagattcagagattct
acgttgaaggagttcattgatatccaaaaccgtgttaaatcagttaaaaaaagatgtgag
gaggcaggttgttcttttctaaactcatcaaaacttgacggggaagaagatttttgggag
gagggtaatgttgtatccattgaaaccccatctagtgcgcctgataataaaaacaaacat
cccgacgtggcatcaacttcccagaatatgagtagtgataaacttggttcatatgctaaa
gagtctaaaagctccaacactgacagcctacttcatgggggtaatcaatcagagtcacac
cctctgaggagtaaacttttgaccaaagctcctgtggtgagatggggttctcacttggat
acttggggttcaaacagggtttttatggccaaccagcggggattggatcttgaaagtcac
tggggtagggtagatgatgatgcagttattccatcagatataatttctgaattgagtgtt
ccggcaatgccttatgaagaaaagcaaattgagatccaaccatgccgtgctcctttgaga
aaagggggactctgtcggagaaaagatatgaaaatttgtccatttcatggacctattatt
cctcgagatgatgaagggaagccgcttggtgcaagtccttcagaagacatgaatgttaat
ataacaaagactgatttagcagagaagttagcaaaacaagcagtaaagaatgttcgggaa
acagacaaggtggcggccaagaagagagaaattgataaacaagaattgaaacgagcaaaa
cttgctaaaattcgggaacacaatgatgcagttttacgggatgctgcattggcttcaact
tcaagatcagccgcttttggagaagatgatgaggtaactaacagagacaagaaagcaagt
ctcgcatccatgctgaaaaagaaagtaacgtcaaaagatagaatagctcagaagcttttg
agttcgcgggcaaggtag
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