KEGG   Medicago truncatula (barrel medic): 25501029
Entry
25501029          CDS       T01716                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03018  RNA degradation
mtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    25501029
  09123 Folding, sorting and degradation
   03018 RNA degradation
    25501029
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mtr03019]
    25501029
   03041 Spliceosome [BR:mtr03041]
    25501029
Messenger RNA biogenesis [BR:mtr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     25501029
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     25501029
Spliceosome [BR:mtr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    25501029
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 25501029
NCBI-ProteinID: XP_024628274
LinkDB
Position
8:complement(13820915..13825092)
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLFLDEAVEFLRDPDDPLKT
TDQTRSLGLIGCRGTAVMLVSPTDGTDEIANPFLEADGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtctgggagaaaagaaactgttctggatttagcaaaatttgttgataaaggagttcaa
gtcaagcttactggtggcagacaagtgacaggtactctaaaagggtatgaccagttactt
aaccttttcctggatgaagctgttgagtttttaagagatcccgatgatccactgaaaact
acagatcagaccagaagtcttggcttaataggttgcaggggaactgctgtcatgcttgtg
tcgccaactgatggtacggacgagattgcaaacccctttcttgaggcagatggggcctag

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