Medicago truncatula (barrel medic): 25501029
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Entry
25501029 CDS
T01716
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25501029
09123 Folding, sorting and degradation
03018 RNA degradation
25501029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25501029
03041 Spliceosome [BR:
mtr03041
]
25501029
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
25501029
mRNA degradation factors
5'-3' decay
Lsm complex
25501029
Spliceosome [BR:
mtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
25501029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
25501029
NCBI-ProteinID:
XP_024628274
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Position
8:complement(13820915..13825092)
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLFLDEAVEFLRDPDDPLKT
TDQTRSLGLIGCRGTAVMLVSPTDGTDEIANPFLEADGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggagaaaagaaactgttctggatttagcaaaatttgttgataaaggagttcaa
gtcaagcttactggtggcagacaagtgacaggtactctaaaagggtatgaccagttactt
aaccttttcctggatgaagctgttgagtttttaagagatcccgatgatccactgaaaact
acagatcagaccagaagtcttggcttaataggttgcaggggaactgctgtcatgcttgtg
tcgccaactgatggtacggacgagattgcaaacccctttcttgaggcagatggggcctag
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