Medicago truncatula (barrel medic): 25501139
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Entry
25501139 CDS
T01716
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
25501139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25501139
03012 Translation factors [BR:
mtr03012
]
25501139
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
25501139
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
25501139
Translation factors [BR:
mtr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
25501139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
ATPase
AAA_19
nSTAND3
AAA_16
T2SSE
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
25501139
NCBI-ProteinID:
XP_013445198
UniProt:
A0A072TNY6
LinkDB
All DBs
Position
8:complement(16829271..16848488)
Genome browser
AA seq
1148 aa
AA seq
DB search
MHIPKSAASFLIGCAKNSLQFRHRNYRFLTSTSPLLLLSTRFSKPFISTRFFSGYYNVEQ
FSDDEYECDFENHQASSTVANVDEWKWKLSMLLRNEKDQEIVSRDKRDRRDYEQIANLAK
RMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEYLDRLQLN
SAKTTDSLDNLNSTNQIRDIDMDENANSFVDESVMEKVLQKRSLRMRNMQRSWQESPEGK
KMLEFRKSLPAFREKEGLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCS
IICTQPRRISAMAVSERVSAERGESLGETVGFKVRLEGMRGKNTHLLFCTSGILLRRLLS
DRNLSGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFGGA
PTFHIPGFTYPVRAHFLEDVLEMTGYKVTSFNQVDDYGQDKLWKTQKQLAPRKRKNQITA
LVEDSLSKSSFENYSPKTRDSLSSWAPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWED
ISCLRDQLKAHPLLGDPNRVLLQTCHGSMATSEQKLIFDKPPPNVRKIVLATNMAEASIT
INDVVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKCV
YEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSSALQAPKPRTVQNAIDFLTMIGA
LDEKENLTNLGKFLSILPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLLPQDKKD
LAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQF
SFILKEAGLVDTDASINNKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVL
LYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLKM
LDGYVDFFLDPNLADCYLKLKDELDKLIQKKLEDPGIDIHKEGKYLMLAVQELVSGDQCE
GRFVFGRDSRKPKASNDENKFTKDGTNPKSLLQTLLMRAGHSAPKYKTKHLKTNEFRALV
EFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNAQPEDDKSPPDVTDNMLKLLGKRR
KSSKRRSD
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcatattccaaaatccgcagcatctttcctcataggctgcgctaaaaactctctacaa
tttcgccaccgcaattatcgatttctcacttcgacttcaccgttgctcttactctccacg
cgcttttctaaaccgtttatatctacgcgcttcttctctggatattataacgttgaacag
ttctctgatgatgaatatgaatgtgatttcgagaatcaccaggcatcgtctaccgtggcc
aacgtggatgagtggaaatggaaactcagtatgctgttacggaatgaaaaggatcaggaa
attgtatctagagacaaaagagataggagagactatgaacaaatagctaaccttgccaaa
agaatgggactttacagtgagctgtttgggaaagtagttgttgcaagtaaggtgcctctt
cctaactaccgaccagatttggatgacaaacgtccacaaagagaggttgtgattccacta
agtttgcaaaggagggtggagggtttggtgcaggagtaccttgatagactacaattaaat
tctgcaaagacaacagactctctggataatctgaattccaccaatcagattagagatata
gatatggatgaaaatgccaattcttttgtcgatgaatctgttatggaaaaggttctccaa
aagaggagtttgaggatgcgtaatatgcaaagatcttggcaggaatcacctgaaggcaag
aagatgctggaattccggaagtctttaccagcatttagggagaaggaaggtttacttcaa
gctatagcacgtaatcaggtaatagttatatctggagagaccggctgtggtaaaactact
caacttcctcaatatatattagagtccgagatagagtccggccgtggggcattttgcagc
attatttgcacacaacctcgaaggatatctgctatggcagtttctgagagagtttcagca
gagagaggagagtctctgggagaaacagttggcttcaaagttcggttagaaggaatgaga
gggaaaaacacccatctgttattttgtaccagtggtatattactccgaaggttgctgagt
gatcggaacctgagtggtataacccatgtgtttgtggatgaaattcacgagcgaggaatg
aatgaagacttcttactgattgtgttgaaggatcttcttccacgtcgtcgtgatttaaga
ttggtattgatgagtgccactttgaatgctgaacttttctcaaattattttggaggtgca
ccgacatttcatatcccgggtttcacctatcccgtaagagctcactttttagaagatgtt
ttggaaatgactggatataaggtgacatctttcaaccaagttgatgattatggtcaagat
aaactgtggaaaacacaaaagcagcttgcaccacgaaagaggaaaaaccagatcactgct
cttgttgaggattccctttctaaatcaagctttgagaactatagtcccaagacacgcgac
tcgttatcttcctgggcacctgactgcataggatttaatctcattgaggctgttctatgc
catatatgtcggaaggaacgaccaggggccgtcttagtatttatgactgggtgggaagat
ataagctgtttaagagatcagcttaaagcacatcctcttttaggagatcccaatagggtt
ctgcttcaaacatgccatggttcaatggcaacttctgaacagaaactcatatttgataaa
cctcctccaaatgtaaggaaaattgtacttgcgacaaatatggcagaggcaagtattacg
atcaatgacgttgtttttgtcatagactgtggaaaagcaaaagagaccacttatgatgct
ttgaataacacaccatgtctgctaccttcttggatttcacaagcatctgcacggcagaga
agaggtagggctggtcgtgtacagccaggagaatgctaccacctttaccccaaatgtgtt
tatgaagccttttctgaatatcaacttcctgaacttttgagaacacccttgaattctctt
tgcttgcaaataaaaagtttgcaggttgagagcattggagaattcctatcatcagctttg
caggcaccaaagccacgtaccgtccaaaatgctattgattttctcacgatgattggagca
ttagatgaaaaagaaaatcttaccaatcttgggaagtttctctcgatacttcctgtagat
cccaagctgggaaaaatgctgataatgggagctatatttcggtgctttgatcctgttctt
acaatagttgctggccttagtgtcagggatcctttccttttgccccaagacaagaaagat
ttagcagggactgcaaagtctaggttttctgctaaagattacagtgatcatatggctctt
gttcgagcatatgaaggatggaaagatgctgaaagagagggatcagcttatgaatactgc
tggagaaattttctctccgcccaaactcttcaggcaattcattcacttcggaaacagttc
agctttatcttgaaagaagctggcttggtagatacagatgcaagcattaataataaattg
agtcataatcaatctcttgtacgtgctgtcatatgttctggactctttcctggcatagca
tcggttgtgcacagggagacatccatgtcatttaagacaatggacgatggccaggtttta
ttatatgcaaattcagtgaatgcaaggtaccagactattccctacccatggttggttttt
ggggagaaagtaaaggtcaatgctgttttcatccgcgattccactggtgtgtctgattca
atacttatcctatttggtggtgctttaagtaatgggatacaggccgggcatctgaaaatg
ttagatggatatgttgacttctttctggatcctaatttagctgactgctatttgaagctt
aaggacgaacttgataagcttatccaaaagaagctagaagatccaggcattgacattcac
aaggaagggaagtatttgatgcttgctgttcaagaattggtttcaggggatcagtgtgaa
ggaagatttgtgtttggtcgtgacagccggaagcctaaggcctctaacgacgagaataaa
ttcactaaagatggaacaaaccccaagagcttgctgcaaacacttttgatgcgagcaggg
cactccgcaccaaaatataaaacaaaacatctgaagacaaatgagttcagggcattggta
gagtttaaaggaatgcaatttgttggcaaaccgaaaaggaataagcaacttgcagaaagg
gatgcagctatagaggcattagcttggttaactcacacctctgacaatgctcagcctgaa
gacgataaatctcctcctgatgtcactgacaacatgttaaaactcctagggaagcgtaga
aaatcatcgaaacgacgttctgattga
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integrated database retrieval system
