Medicago truncatula (barrel medic): 25501403
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Entry
25501403 CDS
T01716
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
KO
K14962
COMPASS component SWD2
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
25501403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25501403
03036 Chromosome and associated proteins [BR:
mtr03036
]
25501403
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
25501403
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
25501403
COMPASS/SET1 complex (yeast)
25501403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
NBCH_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
KNTC1_N
Beta-prop_VPS8
Beta-prop_SCAP
PQQ_2
PQQ_3
Cytochrom_D1
Beta-prop_WDR35_TULP_N
PD40
Motif
Other DBs
NCBI-GeneID:
25501403
NCBI-ProteinID:
XP_013446074
UniProt:
B7FLB2
LinkDB
All DBs
Position
8:30959553..30965400
Genome browser
AA seq
334 aa
AA seq
DB search
MGGTPGEKEEKVSLDLSEEILLSMEVGMSFKDYNGRISSMDFHRASSYLVTASDDESIRL
YDVAAGTSLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
HDRVVSLSLCPRKDCFISGSLDRTVLLWDQRAEKCQGLLHVQGRPAISYDDQGLVFAIAF
GGYIRMFDARMYEKGPFELFSVGGDVSDANVVKFSNDGRLLLVTTTDGHIHVLDSFRGTL
LFAYNVTPVSCNSTLEASFSPDGMFVISSSGDGSIYAWSVRSGKEVASWRSATSDIGPPV
VKWAPGSLMFATGSSELSFWVPDLSKIGAFVGKK
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgggtggaacaccaggggaaaaagaagagaaagtttctttggatctcagtgaagaaatt
cttctcagtatggaagttggaatgtccttcaaagattacaatggtagaattagttcgatg
gattttcatagggcatcaagttatctagttactgctagtgatgatgaatcaattcgttta
tatgacgttgctgctggaacatctttgaagacaattaacagtaagaaatatggggttgat
ttggtttgcttcacatctcatcctacaactgtcatttactcttctaagaatggttgggat
gaatctttgcggcttctatcattgcatgataacaagtacttgagatatttcaaaggtcat
catgacagggttgtctcacttagcttgtgccctcggaaagattgctttatatctggatct
ttagatcgaactgtcttactatgggatcaaagggccgagaagtgccagggactgctacat
gtacaaggaaggcctgctatatcatatgatgatcaagggcttgtctttgcaatagccttt
ggaggatacataagaatgtttgatgcaaggatgtatgaaaagggtccctttgagctattt
tctgttgggggagatgtttctgatgcgaatgttgtgaagtttagtaatgatgggagactc
ttgcttgtaacaactacagatggacatatccatgttcttgactcattccgtggtacactt
ttattcgcatataatgtcacacctgtctcatgcaactccacattagaagcttctttcagc
cctgatggaatgtttgtaatatcaagttctggggacggcagcatctatgcatggagtgtt
cggagtggtaaagaggttgcaagttggagaagtgcaacatctgatattggacctccagtt
gtgaagtgggctcctgggagtcttatgtttgcaaccgggtcgtctgagttgtcattttgg
gttccagatttgtctaaaataggagcctttgttggaaaaaagtag
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