Medicago truncatula (barrel medic): 25501723
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Entry
25501723 CDS
T01716
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25501723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
25501723
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
25501723
Spliceosome [BR:
mtr03041
]
Complex C
Other components
Step II factors
25501723
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
DEAD
AAA_22
HA2_C
nSTAND_NTPase5
AAA_19
ABC_tran
AAA_30
cobW
SLFN-g3_helicase
AAA_29
AAA_23
NAT10_TcmA_helicase
nSTAND3
NPHP3_N
Ribosomal_L32e
ATPase_2
PhoH
SRP54
FtsK_SpoIIIE
AAA_16
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
25501723
NCBI-ProteinID:
XP_013446535
UniProt:
A0A072TT13
LinkDB
All DBs
Position
8:complement(38520741..38531096)
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AA seq
697 aa
AA seq
DB search
MATLPIVQYEEKIIETVENNSITVIIGETGSGKSTQLSQMLHRRGYSKIAVTQPRRVAAV
SVSRRVAQELGVQLGEEVGYAIRFEDRTSRNTRIKYLTDGVLLRESLADPELNDYSVIIL
DEAHERSLNTDILMGLMKRLVKIRSSNLKVLITSATLDGDKVSKFFRDCPVLNIPGKLYP
VEVLYSKERPVNYLDAALKTALDIHIRQPEGDILIFMTGQDDIEKLVMKMEEKVRALDEG
SCMDAIIFPLHGSLPPELQVRVFSPPPPNCRRIIVATNIAETSLTVDGVVYVIDSGYVKQ
RQYNPSSRMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSQIYHDEFLDVTVPEIQR
SSLAGSVLYLKSLDLPDIDILKFDFLDSPSPESLRDALKQLYLIDAIDENGSITSVGRKM
AELPLEPSLSRTLMEANNHGCITEALTVAAMLSSETALLPGQSKTEKKRKRPISNLPDGS
GLGDHIQLLQIFERWHQTDYDIGWCKDHGLQVRGMSFARDVRKQLSQIMQKIAKEPLGIR
TNGKGEEIRRDYRNLRKALCVGYANQLAERKMHHNGYRTLGFQGQVVQVHPSSALSSDEF
GKFPDYVVYHELIATPRPFMRNVCSVEMKWVIPIINKLNTLNVYKLSGGGMDHFEEESER
NIPNLPKKNVEVAAAADDSQSRIQAARERFLARKVNK
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggctacccttccgattgtccaatacgaagaaaagataatcgaaaccgtagaaaacaac
tccatcaccgtcatcatcggcgaaactggttccggtaagagcactcaactctctcagatg
cttcaccgccgcggttactccaaaatcgccgtcactcaacctcgccgtgtcgctgccgtc
tccgtctctagacgagttgctcaagagctcggtgttcagcttggagaagaagtaggttac
gccattcgattcgaagatagaacttcacgcaacacgcgcattaagtacctaactgatggt
gttcttctccgtgaaagtctagctgatcctgaactaaatgattattctgttatcatattg
gatgaagctcatgaaaggagtttgaacacagatatattaatggggcttatgaaacgtttg
gtgaaaattcgttcctccaatctcaaagtgttgatcacatctgctacgcttgatggtgat
aaagtatcgaagttctttcgagattgccctgtattgaacatccctgggaagttgtatcct
gttgaggttctttatagcaaggagcggcctgtgaactatctcgatgcagctcttaaaaca
gctcttgatatacatatacgtcaaccggaaggggatattttgatattcatgactggacag
gatgacatagagaagttggtaatgaaaatggaagaaaaagtccgtgctctcgacgaaggt
tcctgcatggatgctataatctttcctctacatggttctttgccacctgaattgcaggtg
cgtgtatttagtcctccacctccaaattgcagacgaatcattgttgctacaaatattgct
gaaacttctttgactgttgatggtgtagtgtatgttattgactctgggtatgtaaagcag
aggcagtacaatccatctagtaggatgtattcccttgatgttgttcaaattagcaaagtg
caagctaatcagcgggcaggcagagctggacgaacacgaccagggaaatgctaccgtcta
tatccttcccaaatctaccatgatgagtttttggacgttacagttcctgaaattcagaga
tcttctcttgccggcagtgtgctttacttgaagtcattggacctccctgatattgacatt
ctcaaatttgacttccttgattctccgtcacctgaatccttacgagatgccttgaagcaa
ttatatctgattgacgctattgatgaaaatggttcaattacaagtgtcggaagaaaaatg
gctgagcttccgttagaaccatccctgtcaagaactttaatggaagcaaacaatcatggt
tgtataactgaggctttgactgttgctgccatgttatcatctgaaactgcattgctacca
gggcagagcaaaactgagaaaaagaggaaacgtccaatatctaaccttcctgatggttct
ggcttgggtgaccacatccaattactgcagatattcgagcgttggcatcaaactgattat
gacattggttggtgcaaagatcatggcttgcaggtgcgaggaatgtcgtttgccagagat
gtccgtaagcagttatctcagataatgcagaaaatcgctaaggaaccgttgggtataaga
acaaatgggaaaggggaagagatccggagggattatcgaaatttgaggaaggctttatgc
gtgggctatgcgaatcagctggctgaaagaaagatgcatcataatggttatcgaacccta
ggtttccaaggccaagtagtccaggtacatccatcatctgcattgagctctgatgaattt
gggaagtttccagactatgttgtataccatgagctaattgcaacaccacgaccattcatg
agaaatgtatgttctgttgagatgaaatgggttatacccattattaacaagcttaatacc
ttaaatgtgtacaaattaagtggtggtggcatggatcattttgaggaggaatctgagaga
aatattccaaatttgcccaagaagaatgttgaggttgctgctgctgcagacgatagtcaa
agtagaatccaagccgccagagaacgatttcttgctcgaaaagtcaataagtga
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