Medicago truncatula (barrel medic): 5333122
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Entry
5333122 CDS
T01716
Symbol
rpoA, MetrCp027
Name
(RefSeq) RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
5333122 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
5333122 (rpoA)
03400 DNA repair and recombination proteins [BR:
mtr03400
]
5333122 (rpoA)
Enzymes [BR:
mtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
5333122 (rpoA)
Transcription machinery [BR:
mtr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
5333122 (rpoA)
DNA repair and recombination proteins [BR:
mtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
5333122 (rpoA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-GeneID:
5333122
NCBI-ProteinID:
YP_001381697
UniProt:
S4T0W0
LinkDB
All DBs
Position
Pltd:47501..48502
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AA seq
333 aa
AA seq
DB search
MIREKVKVSARTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTIGIAMRRILLGEIEGT
CITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQD
IILPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVR
NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFE
NNQHKVTLPLFTFHDRLLKDKLRKNKKEIALKSIFIDQLELSPRIYNCLKKSNIHTLLEL
LNKSQEDLMKIEHFRVEDVKNILNILQIEKHFA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgattcgagaaaaagttaaagtatctgctcggacactacaatggaagtgtgttgaatca
agggtagacagtaagcgtctttattatggacgctttattctgtctccacttaggaaaggt
caagcagatacaataggcattgcaatgcgaagaattttgctcggagaaatagagggaaca
tgtatcacacgtgcaaaatctgagaaaataccacatgaatattctaccatagtaggtatt
caagaatcaatacatgaaattttaatgaatttgaaagaaattgtattgaaaagtaatctg
tatggaactcgggacgcatctatttgtttcaaaggtcctggatatgtaactgctcaagac
atcattttaccaccttcggtggaaatcgttgataatacacaacatatagctaacctaaca
gaacctattaatttgtgtattgaattacaaattgagaggaagcgtggatatcgtataaaa
acactaaacaacattcaagatggaagttatactatagatgcagtatttatgcctgttaga
aatgcaaatcatagtattcattcttatgtgaatggtaatgagaaacaagagatactcttt
ctcgaaatatggacaaatggaagtttaactcctaaagaagcactttatgaagcctcccgg
aatttgattgatttatttattccttttttacatgcagaagaagaaaacttaaattttgaa
aacaatcaacacaaagttactttacccctttttacttttcatgatagattgcttaaggat
aaactaaggaaaaataaaaaagaaattgcattgaaatccatttttattgaccaattagaa
ttgtctcccaggatctataattgtcttaaaaagtccaatatacatacattattggaactt
ttgaataagagtcaagaagaccttatgaaaattgaacattttcgcgtagaagatgtaaaa
aatatattaaacattttacaaatcgaaaagcattttgcataa
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