Medicago truncatula (barrel medic): 5333185
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Entry
5333185 CDS
T01716
Symbol
rpoC2, MetrCp056
Name
(RefSeq) RNA polymerase beta'' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
5333185 (rpoC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
5333185 (rpoC2)
03400 DNA repair and recombination proteins [BR:
mtr03400
]
5333185 (rpoC2)
Enzymes [BR:
mtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
5333185 (rpoC2)
Transcription machinery [BR:
mtr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
5333185 (rpoC2)
DNA repair and recombination proteins [BR:
mtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
5333185 (rpoC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-GeneID:
5333185
NCBI-ProteinID:
YP_001381726
UniProt:
A0A396IA36
LinkDB
All DBs
Position
Pltd:complement(79349..83473)
Genome browser
AA seq
1374 aa
AA seq
DB search
MEVLMAERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSIS
LGIDDLLTIPSKGWLVQDAEQQSSILEKHNHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMIP
ERILIQTLIGRVVADDIYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSW
ICRLCYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYARAPS
NGKIKFNEDLVHPTRTRHGYPAFICNIDLYVTVESDDIIHNVIIPPKSFLLVQNDQYVKS
EQVIAEIRAGTSTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFLYSNVHILPKTSHLWI
LSGKSCRSDTIHFLLRKDQDQINIDSLSTGKRNISNLLVSNDEVKLKLLSLKTFGTKEKG
ISNYSILNQMICTDHSHLMYPAIFHDTFYLLAKRRRNRFLIPFQSIQERKNELMRPFGVS
IEIPINGIFHRNSIFAYFDDPQYRRQNSGITKYRTVGIHSVFQKEDFIEYRGIKELKPKY
QIKVDRFFFIPEEVHILPESSSIMVRNNSLVGIGTPITFNIRSRVGGLVRLEKKKKKIEL
KLFSGNIHFPGERDKISRHSSILIPPGTVKKKRKESKKINNWIYVQWIATTKKKYFVLVR
PVILYEIPDSIDFIKLFPQDLFQERDNLELKVVNYILYGNGKSIRGISDTRIQLVRTCLV
LNWDQGKKSPSIEEAPSSFVEVSTNGLIEYFLRIDLVKSNTAYIRKRNDPSGLGLIADNE
SDRININPFFSIHYKAKIKKSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQIRPFNNVK
YHNGIKKNPKIPINNNNSLGPLGIARQVGNFYSLYHLITHNQISIMKNFQLDKITEIFQV
IKYYLMDENDKIFKPDLDSNIVLNPFHLNWYFLHHYYCEKTFTIISLGQFICENICIAKM
KNGPHLKLKSGQVITVQMDSVIIRSANPYLATPEATIHGHYGEILYQGDILVTFIYEKSR
SSDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELTIAQSR
ISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERTG
RALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL
GGMIPVGTGFKRIMHRSRSRQYNKITLKKKKLFEVEIRNLLFHHRNLFDSFHFK
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atggaggtacttatggcagaacgggccaatctagtctttcacaataacgtgataggtgga
actgccattaaacgacttattagcagattaatagaccatttcggaatggcatatacatca
cacatcctggatcaagtaaagactctggggttccgtcaagctactgctacatctatttca
ttaggaattgatgatcttttaacaataccttctaaaggatggctagtccaagatgctgaa
caacaaagttctattttggaaaaacataatcattatgggaatgtacatgcggtagaaaaa
ttacgccaatccattgaaatatggtatgctacaagcgaatatttgcgacaagaaatgaat
cctaattttaggatgactgacccctttaatccagtccatataatgtctttttcaggagct
agaggaaatgcatctcaagtgcaccaattagtcggaatgagaggattaatgtcagatcca
caaggacaaatgattgatttacccattcaaagcaatttacgggaaggactgtctttaaca
gaatatataatttcttgctacggagcccgtaaaggggttgtggatactgctgtacgaaca
tcagatgctggatatcttacacgtcgacttgttgaagtggttcaacacattgttgtacgt
cgaacagattgcggtacgattcgcgggatttctgtaaatacccgaaatggaatgatacca
gaaagaattttgatacaaacattaattggtcgtgtagtagcagacgatatatatatcggt
tcacggtgcattgtcgttagaaatcaagatattggaattggacttatcaatcgattcata
acttttcaaacacaaccaatatttattcgaaccccctttacctgtaggaatacgtcttgg
atctgccgattgtgttatgggcggagtcctattcatggggacctggtagaattgggagaa
gctgtaggtattattgctggtcaatctattggcgaaccgggaactcaactaacattaaga
acttttcatactggtggagtattcacagggggtactgcggaatatgcgcgagccccctcg
aatggaaaaataaaatttaatgaagatttagttcaccctacacgtacacgtcatggatat
cctgcttttatatgtaatatagacttgtatgtaactgttgaaagtgacgatattatacat
aacgtgattattccaccaaaaagttttctattagttcaaaatgatcaatatgtaaaatca
gaacaagtgattgctgagatccgcgcgggaacatctacttttaatttgaaagaaagggtt
cgaaaacatatttattctgactcagaaggggaaatgcattggagtaccgatgtgtaccat
gcatccgaatttttgtatagtaatgtacatatcttaccaaaaacaagtcatttatggatc
ttatcaggaaagtcgtgcaggtctgatacaatccattttttacttcgcaaggatcaagat
caaattaacattgattctctttctactggaaaaagaaatatttctaatcttttagtaagt
aatgatgaagtaaaactcaaattattaagtttgaagacctttggtacaaaagaaaagggg
attagcaattattcaatattgaatcaaatgatatgtacggatcattctcatttaatgtat
cctgctatttttcacgatactttttatttattggccaaaagacgaagaaatcgatttctt
attccattccaatcgattcaagaacgaaagaacgaactaatgcgcccttttggtgtttcc
attgaaatacctatcaatggtatttttcatagaaatagtatttttgcttatttcgatgat
cctcaatacagaagacagaattcaggaattactaaatatagaactgtaggaattcattcc
gtttttcaaaaagaagatttcattgagtatcgaggaatcaaagaattaaagccaaaatac
caaatcaaagtagatcgatttttttttattcccgaagaagtgcatattttacccgaatct
tcttccataatggtacggaataatagtctcgttggaataggaacaccaatcactttcaat
ataagaagtcgagtaggcggattggtccgattagaaaagaaaaaaaaaaaaatcgaatta
aaattattttctggaaatatccattttcccggagagagggataagatatcccgacacagt
tctatcttgataccacccggaacggtaaaaaaaaaacggaaggaatcaaaaaaaattaat
aattggatctatgtccaatggatcgcaactaccaagaaaaagtattttgttttggttcga
cctgtaattttatatgaaataccggacagtatcgattttataaaactttttccccaagat
ctattccaggaaagggataatctggaactcaaagttgtcaattatattctttatggaaat
ggaaaatccattcggggaatttccgacacaaggattcaattagttcggacttgtttagtc
ttgaattgggatcaaggcaaaaaaagtccttctattgaggaggccccctcttcctttgtt
gaagtaagtacaaacggtttgattgagtattttctaagaattgacttagtaaaatcgaat
actgcatatatcagaaaaagaaatgacccatctggtttaggattgatcgcggataatgaa
tcggatcggatcaatatcaatccatttttttccattcattacaaggcaaaaattaaaaaa
tcacttagccaaaatcacggaactattcgtatgttgttgaatagaaataaggaatgccga
tcttggataattttgtcatcatctaattgttttcaaataagaccattcaacaatgttaaa
tatcacaatgggataaaaaaaaatcctaaaattccaattaataataataattcattaggt
cctttaggaatagcccgtcaagttggaaatttttattcactttaccatttaataactcat
aatcaaatatcaataatgaaaaatttccaacttgacaaaataacggaaatttttcaagta
attaaatattatttaatggacgaaaatgataaaatttttaaacccgatctagacagtaat
atcgttttgaatccattccatttgaattggtattttctccatcattattattgtgaaaaa
acgtttacaataattagtcttggacaatttatttgtgaaaatatatgtatagctaaaatg
aaaaatggaccacatctaaaactaaaatcgggtcaagttataactgttcaaatggattct
gtaataataagatcggctaacccatatttggcgactccagaagcaaccattcatggccat
tatggagaaatcctttatcaaggagatattttagttacattcatatatgaaaaatcgaga
tccagtgatataacacaaggtcttccaaaagtggaacagatattagaaatacgttcgatt
gattcaatatcgatgaatctcgaaaaaagaattgatgcttggaatgagtgtataacaaga
attctcggcattccttggggattcttgattggtgctgagctaactatagcgcaaagtcgt
atttctttggttaataaaatccaaaaggtttatcgatcccagggagtacacatccataat
agacatatcgaaattattgtgcgtcaaataacatccaaagtcttggtttcagaagatgga
atgtctaatgtatttttacccggtgaattaattggattattgcgagcagaacgaactggg
cgtgccttggaagaagcaatttgttaccgagctttattattgggaataacaaaaacatct
ctgaatactcaaagtttcatatccgaagcgagttttcaagaaactgctagagttttagca
aaagccgctcttcggggtcgtattgattggttgaaaggtcttaaagagaatgttgtttta
gggggaatgatacccgttggtaccggattcaaaagaataatgcaccgttcacggtcaagg
caatataacaaaattaccttgaaaaaaaaaaaattattcgaagtagaaattcgaaatctt
ttgttccatcacagaaatttatttgattcttttcatttcaaataa
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