Microbacterium testaceum: MTES_2916
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Entry
MTES_2916 CDS
T01423
Name
(GenBank) HrpA-like helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mts
Microbacterium testaceum
Brite
KEGG Orthology (KO) [BR:
mts00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mts03019
]
MTES_2916
Enzymes [BR:
mts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MTES_2916
Messenger RNA biogenesis [BR:
mts03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MTES_2916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
AAA_22
T2SSE
nSTAND3
ResIII
UvrD-helicase
SLFN-g3_helicase
AAA_30
NACHT
SRP54
HA2_N
FtsK_SpoIIIE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
BAJ75880
UniProt:
E8NA50
LinkDB
All DBs
Position
complement(3162377..3166738)
Genome browser
AA seq
1453 aa
AA seq
DB search
MSVEPVIVYPPELPVSAARDEIARAIRDHQVVIVAGATGSGKTTQLPKICLELGRTSIAH
TQPRRIAARTIAERIAEEMQVPLGSTVGYKVRFTDKVSADTRVALVTDGILLNEIHRDRL
LRRYDTIIVDEAHERSLNIDFLLGYLRRILPKRPDLKVIVTSATIDPESFARHFAAAPTE
PGGEPVPAPVIEVSGRTYPVEIRYRPPGGAEDADGAGETPEDADADDPAVPSSRGRAGSG
PQKVRSSARAVGKPGGTDDDVDEVGAVVAALRELDREPAGDVLVFFPGEAEIRDAADAIR
GAYPKNAAPTEVLPLYGRLSAAEQHRVFERSSVAGVRRRVILATNVAETSLTVPGIRYVI
DTGTARISRYSNRSKIQRLPIEAVSQASAQQRSGRAGRTSPGIAIRLYSEDDFLRRPEYT
EPEILRTSLASVILQMLSLGFGDIQAFPFLTPPDSRGVKAAFDLLVELGAVKLPAPGSRA
PAARDRDVREDGDPSRQPGGRDEGDPSRQRRGRRDEDGPRLTEVGREIARLPIDPRFARM
LIEARRNDVQAEVLAIVSGMSIQDVRERPEERREEADRFHARFTDPTSDFLSLLNLWEYL
QEKQAELGSSAFRRLCRSEHLNYVRVREWVDVHRQLRSLGGGERGSGDGGARGSGERGGR
GDGAGARRGGGGRGGGRGDARAAGRGARNHVPHMAGSDPSQRHFSGHAPSEVGPGSAATA
PEGHAAGDAIHRAILSGLLSHIGILDQRTMAQTKDRKAPGDARPIKGEYTGARGARFAIF
PGSGLKKKRPSAVMAAELVETSRLFARTVAAVDPAWAEELAPDLVKHSLSEPHWSKDAGS
AAAYEKVTLFGVELVGRRRVQLARFDRPLAREMFVRHALVEGEWDPSVLDKRLTAFLRRN
QEQRRLLEKIEERERRRDILIGDEAVFAFYNARIPADVTDVRSFETWWKDASNRTPHLLD
LRESDLTGDRAQGDDRAFPARWRQGDQTLNLAYRFEPGAPDDGVTVVVPLPLLAQLRPDG
FDWQVPGMRDELVTALLRALPKTIRRNVVPAADWAEKFSAELAEKGPEHANGLPKTTLVD
ALAALVQRVANQRVSAADFELERVPAHLLPSFRAVDGRGRAIGSDRDLAALQRRLADRAR
SSVESTIARPAQRAAKVAEASPAFASRAKLTTWDLDELTEVVDTPVAGGVVRGYPALVDE
GDSVALRVEATPEDAERHTRAGIRRLMLLAVASPASYVLDHLTANEKLALAASPYQNAKA
LIEDARVALADDILGRESPTGVVRTRADFERVRDAFSAASVDRTFQTVSLAAKILLAQRE
VERAMKDAASITLLGALNDVRGQVKGLLFPGFLSRTGLPRLQHYPRYLAGALERVKTLSD
NPGRDRQRMTEYERAAAGFVEAGGTVPLPADAPANLVQTRWLLEELRVSLFAQRLGTAEP
VSPQRIAKALKGG
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgtcgaacccgtcatcgtctacccgcccgagctgcccgtcagcgccgcgcgggac
gagatcgcgcgcgccatccgcgaccaccaggtcgtgatcgtcgccggtgcgaccggctcg
ggcaagaccacgcagctgcccaagatctgcctcgagctcggccgcacctcgatcgcgcac
acgcagcctcgccgcatcgccgcgcgcacgatcgccgagcgcatcgccgaggagatgcag
gtccccctcggctcgaccgtcgggtacaaggtccgcttcaccgacaaggtgtccgccgac
acgcgcgtggcgctggtgaccgacggcatcctgctcaacgagatccaccgcgaccggctc
ctgcgccgctacgacacgatcatcgtcgatgaggcgcacgagcgctccctgaacatcgac
ttcctgctcggctacctgcgccgcattctgccgaaacgccccgacctcaaggtcatcgtc
acctcggcgacgatcgaccccgagagcttcgcgcgccacttcgccgcggctcccaccgag
cccggcggcgagccggtgccggcgccggtgatcgaggtgtcgggccgcacgtatccggtg
gagatccggtaccggccgccgggcggcgcggaggacgcggacggcgcgggcgaaactcct
gaggatgcggatgccgacgacccggccgtcccgtcatcccgcggccgcgcggggtcgggg
ccgcagaaagtccggagttccgcacgcgctgtcggcaagcccggcggcactgacgacgac
gtggacgaggtcggggccgtcgtcgcggccctccgcgagctcgaccgcgagcccgcgggc
gacgtgctcgtcttcttccccggcgaggccgagatccgcgatgcggcggatgccatccgc
ggggcgtatccgaagaatgccgcgccgaccgaggtgctgccgttgtacggccgcctgtcc
gccgcggaacagcaccgcgtcttcgagcgctcgagcgtcgcgggcgtccgccgccgcgtc
atcctcgccacgaacgtcgccgagacgagtctcacggtccccggcatccggtacgtcatc
gacaccggaaccgcccgcatctcgcggtacagcaaccgctcgaagatccagcggctgccg
atcgaggccgtgtcccaggcgtcggcgcagcaacgctcggggcgtgcgggacgcacgtcg
ccgggcatcgcgatccggctgtactccgaggacgacttcctgcgccgaccggaatacacc
gaaccggagatcctgcgcacgtcgttggcatccgtgatcctgcagatgctgtcgctcggg
ttcggcgacatccaggctttcccgttcctcaccccgcccgactcgcgcggtgtgaaagcg
gcgttcgacctgctcgtcgagctcggcgcggtgaagctgccggcgccggggtcgcgcgcc
cctgccgcgcgcgaccgcgatgtgcgcgaggacggtgacccgtcgcgccagccgggcggg
cgcgacgagggcgacccgtcgcggcagcgccgcgggcgacgcgacgaggacggcccccgc
ctcaccgaggtcggccgcgagatcgcccggctgccgatcgacccgcgcttcgcgcgcatg
ctcatcgaggcccgccggaacgacgtgcaggccgaggttctcgcgatcgtgtcgggcatg
tcgatccaagacgtgcgggagcgtcccgaggagcgccgcgaggaagccgaccgcttccac
gcgcggttcaccgatccgaccagcgatttcctctcgctgctgaacctgtgggagtacctg
caggagaagcaggccgagctcggctcgagcgcgttccggcgtctgtgccgcagcgagcac
ctcaactacgtgcgcgtgcgcgagtgggtggacgtgcaccggcagctgcggtccctcggc
ggcggcgagcgcgggtcgggcgacggcggagcgcgcggctccggcgagcgcggcgggcgc
ggcgacggcgcgggtgcccggcgcggcggcggcgggcgcggcggcgggcgcggcgacgcc
cgcgcggccggtcgtggcgcgagaaaccatgtcccacatatggccggttcggacccctcg
cagcgacacttttcgggacatgcaccgtcagaagtgggaccagggtctgccgccaccgcc
cccgagggccacgccgccggcgacgcgatccaccgagccatcctgtccgggctcctgtcg
cacatcggcatcctggatcaacgcacgatggcgcagaccaaggaccgcaaggcgccgggc
gatgcccgcccgatcaagggcgagtacaccggcgcgcgcggcgcgcggttcgcgatcttc
cccgggtcggggctgaagaagaagcggccctcggcggtcatggcggccgagctcgtcgag
acctcgcgcctgttcgcccgcacggtcgccgccgtcgacccggcgtgggccgaagagctc
gcccccgacctcgtcaagcactcgctgagcgagccccactggtcgaaggatgccggctcc
gccgccgcctacgagaaggtcacgctcttcggggtcgagctcgtcgggcggcgacgcgtg
cagctcgcgcgcttcgaccgccctctcgcgcgggagatgttcgtgcggcacgcgctcgtc
gaaggcgagtgggacccctcggtgctcgacaagcggctcaccgcgttcctccgccgcaac
caggagcagcgccgcctgctggagaagatcgaggagcgcgagcgccgccgcgacatcctc
atcggcgacgaagcggtgttcgcgttctacaacgcccgcatcccggccgacgtcaccgac
gtgcgctcgttcgagacgtggtggaaggatgcctcgaaccgcacgccgcacctgctcgac
ctgcgcgagtccgacctcaccggcgaccgcgcgcagggcgatgaccgcgccttccccgca
cggtggcgccagggcgaccagacgctgaacctcgcctaccgcttcgagcccggagcgcct
gacgacggcgtcacggtggtcgtcccgctgccgctgctcgcgcagctgcgccccgacggc
ttcgactggcaggtgcccggcatgcgcgacgagctggtcacggccctgttgcgcgcgctg
ccgaagaccatccgccgcaacgtcgtgcccgcggccgactgggccgagaaattctcggcc
gagctcgccgagaagggccccgagcacgcgaacggtctgccgaagacgacactcgtcgac
gccctcgcggccctcgtgcagcgcgtggcgaaccagcgggtgagcgccgccgacttcgag
ctcgaacgggtgcccgcgcacctgctgccctccttccgcgcggtcgacggccggggccgc
gcgatcggcagcgatcgcgacctcgcggctctgcagcgacggttggcggacagggcccgc
tcgagcgtcgagtccacgatcgctcgcccggcgcagcgagccgcgaaggtcgccgaggcc
tcccccgcgttcgcctcgcgcgcgaagctcacgacctgggacctcgacgagctcaccgag
gtcgtcgacacgcccgtcgccggcggcgtcgtgcgtgggtacccggcgctcgtcgacgag
ggcgacagcgtggccctgcgcgtcgaggcgacgcccgaggacgccgagaggcacacccgc
gccggcatccgtcgcctgatgctgctcgccgtcgcctcccccgccagctacgttctcgac
cacctcaccgcgaacgagaagcttgcgctcgcggcatccccgtaccagaacgcgaaagcg
ctgatcgaggatgcgcgcgtggccctggccgacgacatcctcgggcgcgagagcccgacc
ggtgtcgtgcgcaccagggccgacttcgagcgggtgcgcgacgcattctcggccgcctcg
gtcgaccgcacgttccagacggtgtcgctggccgcgaagatcctgctggcgcagcgcgag
gtcgagagggcgatgaaggatgccgcctccatcacccttctcggagccctcaacgacgtg
aggggccaggtgaagggcctgctgttccccggcttcctctcgcgcacgggcctgccgcgc
ctgcagcactaccctcgctacctcgccggagcgctcgagcgggtgaagacgctgtccgac
aacccgggccgcgaccgccagcgcatgaccgagtacgagcgcgccgccgcgggcttcgtc
gaggccggcggcacggtgccgctccccgccgacgctcccgcgaacctcgtgcagacgcgg
tggttgctggaggaactgcgcgtcagcctcttcgcccagcgcctcggcaccgccgagccg
gtgtcgcctcagcgcatcgcgaaggcgctcaaaggcgggtga
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