Mycobacterium tuberculosis CAS/NITR204: J113_08780
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Entry
J113_08780 CDS
T02652
Name
(GenBank) cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mtuc
Mycobacterium tuberculosis CAS/NITR204
Pathway
mtuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J113_08780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtuc03019
]
J113_08780
03009 Ribosome biogenesis [BR:
mtuc03009
]
J113_08780
Enzymes [BR:
mtuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J113_08780
Messenger RNA biogenesis [BR:
mtuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J113_08780
Ribosome biogenesis [BR:
mtuc03009
]
Prokaryotic type
rRNA helicases
J113_08780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
B_solenoid_dext
Motif
Other DBs
NCBI-ProteinID:
AGL26740
UniProt:
R4M7C9
LinkDB
All DBs
Position
1395891..1397582
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AA seq
563 aa
AA seq
DB search
MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS
SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI
LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA
LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD
IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVLPRELH
LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD
VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH
KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL
RPYRPPDAARRHNGGKPRRKHVG
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggccttcccggaatattcgcctgcggcgtccgctgcgacgtttgctgacctgcagatt
catccccgcgtcttgcgggcgatcggcgacgtcggttacgagtcaccgacggctatccag
gcggctacgatcccggcgttgatggcaggctccgacgtggtggggctggcgcagaccggc
accggcaagacggcggcatttgcgattccgatgctgtccaagatcgacatcaccagcaag
gtgccccaggcgctggtgctggtgcccacccgggagctggctctgcaggtggccgaggcg
ttcggccgctacggtgcctatctgtcgcaactcaacgtgctgccgatctacggcggatcg
tcgtatgccgtgcaactggccggattgagacgcggcgcgcaggtggtggttggcaccccc
ggtcgtatgatagaccatctcgaacgggcgaccttggacctgtcgcgggtggactttcta
gtgctcgatgaggccgatgagatgctgaccatgggtttcgccgacgacgttgagcgcatt
ctgtccgagacccccgaatacaagcaggtcgccctgttttccgcgaccatgccgccggcg
atccgcaaactcagcgccaagtatctgcacgatccgttcgaagtcacttgtaaggcgaaa
accgctgtggccgagaatatttcgcagagctacattcaggtagcacggaagatggacgcg
ctcaccagagtgctcgaagtcgagccgttcgaggcgatgatcgtctttgtccgcaccaag
caggcgaccgaggagattgccgaaaagctgcgtgcccgagggttttccgcggctgccatc
agcggtgacgtcccgcaggcgcagcgggagcggaccatcacggcgctgcgggacggcgac
atcgatatcctggtcgccaccgatgtggcggcgcgcggactcgacgtggagcggatatca
cacgtgcttaactacgacatcccgcacgacaccgagtcctacgtacaccggatcgggcgc
accggcagggccgggcgttcgggagccgcgctgatattcgtcttgccacgggagcttcac
ctgctcaaggcgatcgaaaaggctacgcggcaaacgcttaccgaggcgcaattgcccacc
gtcgaggatgtcaacacccagcgggtggccaagttcgccgattccatcaccaatgcgctg
ggcggtccgggaatcgagctgttccgccgactggtcgaggagtatgaacgcgagcatgat
gtcccgatggctgacatcgccgcggcactggccgtgcagtgccgcggcggtgaggcattc
ctgatggcacccgacccgccgctttcgcggcgcaaccgcgaccagcgtcgggaccgtccg
caaaggcccaagcgtagaccggacttgaccacctaccgcgtcgccgtcggcaagcggcac
aagatcggtccaggcgccatcgtcggcgccatcgccaatgagggtgggctgcaccgcagc
gacttcggtcagatccgtatcgggccagacttctcgctagtagaattgccggcgaagctg
ccccgcgcgacgctcaaaaagcttgcacagacccgtatctcgggtgtgctgatcgacctt
cggccataccggccgcccgacgcggcgcgccggcataatggcggcaaaccacggcggaaa
cacgtcggatga
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