Mycobacterium tuberculosis Haarlem/NITR202: I917_09225
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Entry
I917_09225 CDS
T02654
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mtuh
Mycobacterium tuberculosis Haarlem/NITR202
Pathway
mtuh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtuh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I917_09225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtuh03021
]
I917_09225
03019 Messenger RNA biogenesis [BR:
mtuh03019
]
I917_09225
Transcription machinery [BR:
mtuh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
I917_09225
Messenger RNA biogenesis [BR:
mtuh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
I917_09225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Spore_III_AA
AAA_25
NACHT
DUF2934
CoV_NSP2_C
AAA_22
VWA_2
PIP5K
Motif
Other DBs
NCBI-ProteinID:
AGL22990
UniProt:
R4LWX3
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All DBs
Position
1456617..1458179
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AA seq
520 aa
AA seq
DB search
MRKNELIAAIXEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQ
VRPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGG
QQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFV
RTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSING
GSVEDAKKRPEFGKLTPLYPXQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGK
TTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAE
LAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAA
RNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRGFPCGRREPFW
NPQGRATAVARRVRYCAQAAPRAIGPGFPPGHRPADVAAA
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgcggaagaacgaactgatcgctgcgattgrggagatcaggcgacaggccaacggcgcc
ccagccgttgaccggtcggctcaagagcacgacaagggcgaccggccgcccagttccgag
gcaccggccacccagggggaacagaccccgaccgaacagatcgattcccaaagccaacag
gtccgcccggagcggcgcagcgccacccgtgaagcgggaccctccggttccggtgagcgt
gcgggcacagccgcagacgacaccgacaaccgccaaggcggtcaacaggacgccaagacc
gaggagcgtggcaccgacgcgggtggcgaccaagggggtgaccagcaggcttcgggcggt
cagcaggcgcgcggcgacgaggacggagaagcgcgtcagggccggcgcggacgccggttc
cgcgatcggcggcgccgcggtgaacgatccggcgacggcgccgaggctgaactgcgtgag
gacgacgtcgtccagccggtagccggcatactcgacgtcctggacaactacgcgtttgtg
cgcacctccggctacctacccggtccgcacgacgtgtatgtgtcgatgaacatggtgcgc
aagaacggcatgcgccgtggtgatgcggtgaccggtgcggtgcgggtgcccaaggaaggg
gagcaacccaaccagcggcagaagttcaacccgctggtccgcctggacagcatcaacggc
ggatcggtcgaagacgccaagaagcggcccgagttcggcaaactgacgccgttgtacccc
amccagcggcttcgtctggaaaccagtaccgagcggctgaccacccgggtcatcgacctc
atcatgccgatcggcaagggtcaacgcgcgttgattgtgtcgccgcccaaagcgggcaag
acaacgatcctgcaggacatcgccaacgcgatcaccaggaacaacccggaatgccacctc
atggtcgtgctcgtcgacgagcggcctgaggaggtcaccgatatgcagcgctcggtcaaa
ggcgaggtcatcgcttcaactttcgaccggccgccgtcggaccacacgtcggtcgccgag
ctggcgatcgaacgcgccaagcggctggtggagcaaggcaaggacgtcgtggtgctgctc
gattcaatcacccggctaggccgcgcttacaacaacgcgtcgccggcgtcgggccggatc
ctgtccggtggtgtcgattccacggcgttgtacccgcccaagcgcttcctgggggccgcg
cgcaacatcgaagagggcgggtcgctgaccatcatcgccactgcgatggtcgagaccggg
tccactggtgacacggtcattttcgaggagttcaagggcaccggcaacgccgagctcaag
ctggaccgcaagatcgccgagcggcggggttttccctgcggtcgacgtgaacccttctgg
aacccgcaaggacgagctactgctgtcgcccgacgagttcgctattgtgcacaagctgcg
ccgcgtgctatcgggcctggattcccaccaggccatcgacctgctgatgtcgcagctgcg
taa
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