Methylocella tundrae: MTUNDRAET4_1276
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Entry
MTUNDRAET4_1276 CDS
T05970
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mtun
Methylocella tundrae
Pathway
mtun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTUNDRAET4_1276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtun03019
]
MTUNDRAET4_1276
03009 Ribosome biogenesis [BR:
mtun03009
]
MTUNDRAET4_1276
Enzymes [BR:
mtun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MTUNDRAET4_1276
Messenger RNA biogenesis [BR:
mtun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MTUNDRAET4_1276
Ribosome biogenesis [BR:
mtun03009
]
Prokaryotic type
rRNA helicases
MTUNDRAET4_1276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VFU08169
UniProt:
A0A4V6IMF3
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All DBs
Position
1:1124024..1125733
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AA seq
569 aa
AA seq
DB search
MAFLSTIPSLARALAERNYESATPVQTAVLEANAANRDLLVSAQTGSGKTVAYGLAIAPN
LIAEAERLGQAAEPLALIIAPTRELALQVQRELAWLYQYAGARVICCVGGMEPRRERRDL
AAGAHIVVGTPGRLRDHIERGALDVSKLKTVVLDEADEMLDLGFREDLEFILETTPKERR
TLLFSATLPKGIASLANRFQHAATRIEVASGESGHADIEYRAIRVAPNEIEHAVVNVLRL
LEAPSALVFCNTREAVRHLQAILLERGFSAVLLSGELSQNERNHALQALRDGRARVCVAT
DVAARGIDLPGLALVIHAELPHDAEILQHRSGRTGRAGRKGVSVLLIPNSRRRRAEQLMA
IAGVQPVWSGPPSADEIRKLDQERLLRDPLLTESSSDEDRVMARALLDERSAEDIAAALV
RVYRSRLPAPEEVQDPGQGREPRAPREGKGFERPSGPRSRSQGVWFRLDIGAKKNADPKW
LLPMLCRRGKITKQDIGAIRIFERETKFEVSESVAKQFLANVGRPDGDPIRIELAAEGAE
RAPEKPRGARAFDRNAAPDRAPRGKRPKE
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
ttggcgtttctatcaaccatcccgtcgctggcgcgcgcgcttgcggagcgaaactatgag
tctgcgacgcccgttcagacagcggtgctggaggccaacgccgcgaaccgcgaccttctc
gtctctgcgcagacgggatcaggcaagaccgtcgcctacggtctggcgatcgcccccaat
ctcatcgccgaggccgaaaggctcggtcaagcggccgagccgttggctctgatcattgcg
ccgacgcgcgagcttgcgcttcaggttcagcgcgagcttgcctggctctaccaatacgcc
ggcgcgcgcgtgatttgctgcgttggcggcatggagccgaggcgcgagcggcgcgatctc
gccgcgggggcgcatatcgtggtcggaacgccggggcgccttcgcgaccatatcgaacgc
ggggccctcgacgtctcgaaactgaagaccgtcgtcctcgacgaagccgacgaaatgctt
gatctcggctttcgcgaggaccttgagttcatccttgaaacgacgccgaaggagcggcgc
acgctcctgttttccgcgaccttgccgaagggaatcgcgagcctcgccaatcgatttcag
cacgctgcgacgcgcatcgaagtcgcgagcggcgagagcggacacgccgatatcgagtat
cgcgccatccgcgtcgcgccgaacgagatcgaacacgccgtcgtcaatgtgctccgcctc
ctcgaggcgccgagcgcgcttgtgttctgcaatacgagggaagccgtgcgtcacctccag
gcgatcctgctggaacgcggcttctcggctgtcctgctgtccggagaactgagtcagaac
gagcgcaaccacgcgcttcaggctctgcgcgacggacgcgcgcgggtctgcgtcgcgacc
gacgtggctgcgcgcggcattgacctgccgggccttgccctcgtcattcacgccgagctt
cctcatgacgccgaaatcctgcagcaccgcagcggacgcacgggccgcgccgggcgcaag
ggcgtcagcgttctgctcattccgaattcacgccggcggcgcgcggaacagttaatggcg
atcgcgggcgttcagccggtctggagcgggccgccatccgccgacgaaattcgcaagctc
gaccaggaacgcctgctgcgcgatccgctgctgacagagtcaagcagtgacgaagatcgc
gtcatggcgcgagcgttgctcgacgaacgatccgccgaagatatagcagcggcgctcgtt
cgcgtttatcgctcccgccttccggcccccgaagaggtccaggaccccggccagggccgt
gagccacgggcgccgcgcgagggcaagggattcgagcgcccgtcaggcccgcgctcgcgt
tcacaaggcgtctggttcaggctcgatattggagcgaaaaaaaacgccgacccgaaatgg
cttttgcccatgctgtgccggcgcggcaaaattacgaaacaggatattggcgcgatcaga
atcttcgagcgcgagacaaaattcgaggtgtctgagagcgtcgccaagcagtttctcgca
aatgtcggtcgtcctgacggcgatccgattcgcattgaactggctgcggaaggagcggag
agggctcccgagaaaccgcgcggcgcgcgcgccttcgaccggaacgcggcgcctgacagg
gcgcctcgcggcaagcgcccgaaggaatag
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