Methylocella tundrae: MTUNDRAET4_4143
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Entry
MTUNDRAET4_4143 CDS
T05970
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mtun
Methylocella tundrae
Pathway
mtun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTUNDRAET4_4143 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtun03019
]
MTUNDRAET4_4143 (rhlE)
Enzymes [BR:
mtun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MTUNDRAET4_4143 (rhlE)
Messenger RNA biogenesis [BR:
mtun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MTUNDRAET4_4143 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VFU11024
UniProt:
A0A4V6IN56
LinkDB
All DBs
Position
1:complement(3767772..3769130)
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AA seq
452 aa
AA seq
DB search
MQDFSGLGLAAPLLLALNKLGYTAPTPIQAQAIPHLMTGRDLVGIAQTGTGKTAAFALPI
LHHLITHPQQAPRGGARVLVLSPTRELASQIAESFRSLGSEMQLSVQVVFGGVPHGAQIR
ALQRGLDVLVATPGRLVDHLDAGAAHLGKTEFFVLDEVDQMLDLGFVKSIRRVVGTLPKR
RQNLFFSATMPTEIAKLAGELLNDPVQVSVTPVAKTADRVNQQVLFVETHRKRDVLVDLL
SDAGMARTIIFTRTKRGADKVTQHLDATGIAAVAIHGNKSQNQRERSLAAFRAGRVRALV
ATDIAARGIDIDGVTHVVNFDLPEVPEAYVHRIGRTARAGAEGVAISLCDGAERDLLRNI
ERLTRLNLPTQDRRAAPGSPEAKPPARSATSPRPQQDRRRGPGASRPQERGFGARSAGAP
GSNGPSASRPRYNSARPQGERRRGDRDAIQPA
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagatttctccggactcggcttggccgcgccccttctccttgccctgaataaactc
ggctacacggcgccgacgcccattcaggcgcaagccatcccccatctcatgacgggccgc
gatctcgtcggcatcgctcaaacgggcacgggcaagacggccgccttcgccctccccatc
cttcatcatctcatcactcatccgcaacaggcgccgcgtggcggagcccgcgttctggtg
ctgagcccgacgcgcgaactcgccagccagatcgccgagagcttccgcagcctcggctcg
gaaatgcagctttccgtccaggtggtgtttggcggcgtgccgcatggcgcgcagatcagg
gcgttgcagcgcggtctcgatgttctcgtcgcaacgcccggccgtctcgtcgatcatctc
gacgccggcgccgcgcatctcggcaagactgaatttttcgtgctcgatgaagtcgaccag
atgctcgacctcggtttcgtcaagtcgatccgccgcgtcgtcggcacgctgccgaagcgc
cgccagaatctgttcttctcggcgacgatgccaaccgaaatcgccaagctcgccggcgaa
ctcctcaatgatcccgtccaggtctcggtcacgccggtggcaaagacggccgaccgggtc
aaccagcaggtgcttttcgtcgagacccatcgcaagcgcgacgttctcgtcgatctcttg
tccgacgccggaatggcgcgcacgatcatcttcacccgcacgaagcgcggcgccgacaag
gtgacgcagcatctcgacgcgacaggcatcgcggcggtcgcgatccacggcaacaagagc
cagaatcagcgcgaacgctctctcgcggctttccgcgccgggcgcgtgcgcgctctcgtt
gcaacggacatcgccgcgcgcggcatcgatatcgacggcgtcacccatgtcgtcaatttc
gacctgccggaagttcccgaagcctatgttcatcgcatcgggcgcaccgcgcgggcgggc
gccgaaggcgtcgcgatttcgctttgcgacggcgccgagcgcgaccttcttcgcaatatc
gaaaggctgacgcgccttaacctgccgacgcaggaccgccgcgcggcgcccggctcgccg
gaggcaaagccgccggcgcggagcgcaacctcgccgcggccgcagcaggacaggcggcga
ggcccaggcgcctcgcgtccgcaagaacgcggtttcggcgcgcgaagcgccggcgcgccg
ggctcgaatgggccgtcggcgtcaaggccgcgttataatagcgcaaggccgcagggcgaa
agacgccgcggcgatcgcgacgccatccagccggcgtaa
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