Methylocella tundrae: MTUNDRAET4_4224
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Entry
MTUNDRAET4_4224 CDS
T05970
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit)
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mtun
Methylocella tundrae
Pathway
mtun03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mtun00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MTUNDRAET4_4224 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtun03021
]
MTUNDRAET4_4224 (rpoC)
03400 DNA repair and recombination proteins [BR:
mtun03400
]
MTUNDRAET4_4224 (rpoC)
Enzymes [BR:
mtun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MTUNDRAET4_4224 (rpoC)
Transcription machinery [BR:
mtun03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MTUNDRAET4_4224 (rpoC)
DNA repair and recombination proteins [BR:
mtun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MTUNDRAET4_4224 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
VFU11105
UniProt:
A0A4U8Z756
LinkDB
All DBs
Position
1:3835836..3840032
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEVMNLFNPVVQPQAFDQIQISIASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHISLAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFESYIVLDPGLTPLKDRQLLNEEDYLRAQDEYGQDSFTA
MIGAEAIREILRNMDLPTIAEKLKIEIAQSTTELKPKKLAKRLKIIEAFMHSGNKPEWMI
LTEVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PDLKLHQCGLPKKMALELFKPFIYSRLDAKGLSATVKQAKKLVEKEKPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGLPIIVPSQDIVLGLYYVSLMRDGEPGQGMAFSNIGEVEHALF
SKAITLHTRIKGRAWTYDSEGKRQSKIYDTTPGRLILGQLMPDHAKIPFDVVNKLMTKKE
ISNMIDVVYRNCGQKETVIFCDRIMALGFREAFKAGISFGKDDMVVPETKPKIIADTSAL
AKEYEQQYNDGLITQGEKYNKVVDAWAKCSDKLAEEMMARISAVQKDDSGRDKPINSIYM
MSHSGARGSPTQMKQLAAMRGLMAKPSGEIIESPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDSIITTLDCGSKGGIRMRAIIDAGQVVASLATRILGRTA
AEDLKDIEGNIIVATGEMIQEWHIDHINAAGIQEVKIRSVLTCEAKNGVCGTCYGRDLAR
GTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQIADQSFIESNFDGIVRIRNRHLA
RNTDGDLMVMARNVAVVIEGSDGTERAVHRVQYGARMKVDEGDQIKRGQRIAEWDPYTRP
ILTEVDGFIGFEDLVEGASMTETVDEATGIAKRMVIDWRLNQRSATLKPAIVIKAADGKI
SKLQRGGDARYTLPVESIIGVDPGGVVRAGDIIARISMESAKTRDITGGLPRVAELFEAR
RPKDHAIIAEASGTVQFGRDYKNKTRISIIPNEEDAEPIEYLIPKGKHIHLQDGDVVEKG
DYIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVAINDKHIEVIVRQMLQKVDIV
DPGDTDFLANEQVDQVELEEANAKALEQGGKPATGTPVLLGITKASLQTRSFISAASFQE
TTRVLTEAAVNGKADTLEGLKENVIVGRLIPAGTGAAMAKLRRVAAMRDELILAQKGETS
REAAPTPLLPAAVPAAQD
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagaggtcatgaatctcttcaatccggtcgtgcagccgcaggctttcgaccag
atccagatatcgatcgccagccccgaaaagattttgtcctggtcgttcggcgagatcaag
aagcccgagacgatcaattatcgcaccttcaagccggaacgcgacgggcttttctgcgcc
cggattttcgggccgatcaaggattacgagtgcttgtgcggcaagtacaagcggatgaaa
tataagggcgtcatctgcgagaagtgcggcgtcgaggtcactctgtcgcgcgtgcggcgc
gagcgcatgggccacatctcgctcgcggcgccggtcgcgcatatctggtttttgaagtcg
ctgccctcgcgcatcggccttctgctcgatatgacgctgaaggatctcgagcgcattctt
tattttgaatcctacatcgttctcgatcccggcctgacgccgctgaaggaccgccagctc
ctcaatgaagaggattatctgcgggcccaggacgagtacgggcaggattccttcacggcg
atgattggcgcggaagcgatccgcgagatcctgcgcaacatggatctgccgacgatcgcc
gagaagctcaagatcgaaatcgcgcagtcgaccaccgagctgaagccgaagaagctcgcc
aagcggctcaagatcatcgaggccttcatgcattctggcaacaagccggaatggatgatc
ctgaccgaagttcctgtcatcccgccggacttgcgcccgctcgtcccgctcgatggcggc
cgcttcgcgacctccgatctcaacgatctctatcgccgcgtcatcaaccgcaacaaccgt
ctgaagcggctgatcgaactgcgcgcgcccgacatcatcgtgcgcaatgaaaagcgcatg
ttgcaggaggcggtcgacgccctctttgacaacggccggcgcgggcgcgtcatcacgggc
gccaacaagcggccgctgaagtcgctcgccgacatgctgaaaggcaagcagggccggttc
cggcagaacctgctcggcaagcgcgtcgattattcgggccgctccgtcattgtcgtcggt
cccgatctcaaactgcaccaatgcggcctgccgaagaagatggcgctcgagcttttcaag
ccgttcatctactcgcgcctcgacgccaagggtctgtccgccacggtcaagcaggcgaag
aagcttgtcgagaaagaaaagcccgaggtttgggatatcctcgatgaggtcatccgcgaa
catccggtgatgctgaaccgcgcgccgaccttgcatcgtctcggcattcaggcctttgag
ccgaagctgatcgaaggtaaggcgatccagttgcatcctctcgtctgcgccgccttcaac
gcggatttcgacggcgatcagatggcggtgcatgtcccgctctcgctcgaggcgcagctc
gaggcgcgcgtgctcatgatgtcgaccaacaacatcctgcatccggccaatggtctgccg
atcatcgtgccgagtcaggatatcgtgcttggcctctattatgtgtcgctgatgcgcgat
ggcgagcccggtcagggcatggccttttccaatatcggcgaagtcgagcacgccttgttc
tccaaggcgatcacgctgcatacgcggatcaagggcagggcctggacctatgacagcgaa
ggcaagcgtcagtcgaagatctatgacacgacgccgggccgcctgatcctcgggcagttg
atgccggaccacgccaagattcctttcgacgtcgtgaacaagctcatgaccaagaaagaa
atctccaacatgatcgacgtcgtctaccgcaactgcggtcagaaagagacggtgatcttc
tgcgatcgcatcatggcgctcggcttccgcgaggccttcaaggccggcatttcgttcggc
aaggacgatatggtggtgccggagacgaagccgaagatcatcgccgacacgagcgcgctc
gccaaggaatatgagcagcagtataatgacggcctgatcacgcagggcgagaaatacaac
aaggtggtcgacgcctgggcaaaatgctcggacaagctcgccgaagaaatgatggcgcgc
atctccgccgtgcagaaggacgacagcggccgcgacaagccgatcaattccatctacatg
atgtcgcattcgggagcgcgcggttcgccgacgcagatgaagcagctcgccgcaatgcgc
ggcctcatggccaagccctccggcgagatcatcgagagcccgatcatctcgaacttcaag
gaaggcctcaccgtgctcgagtacttcaactcgacgcatggcgcccgcaagggtctcgcc
gacaccgccttgaagaccgcgaactccggctatctaacccggcgtctcgtcgacgtcgcg
caggattcgatcatcacgacgctggattgcggatccaaaggcggcatccgcatgcgcgcg
atcatcgacgccggacaggtcgtcgcctcgctcgcgacccgcattcttgggcgcacggcg
gcggaggatctgaaggatattgaaggcaatatcattgtcgccaccggcgagatgattcag
gaatggcatatcgaccacatcaatgcggccggcatccaggaagtgaagattcgttcggtg
ctgacctgcgaggcgaaaaacggcgtttgcggcacatgctatggccgcgatcttgcgcgc
ggcacgcctgtcaacatgggcgaggcagtgggcgtcatcgcggcgcaatccatcggcgag
ccgggcacccagctgacgatgcgcaccttccacatcggcggcgcggcgcagatcgcggat
cagtccttcatcgagagcaatttcgatgggatcgtgcgcatccgcaaccgtcatctggcg
cgcaacaccgatggcgatctgatggtcatggcgcgcaatgtcgcggttgtgatcgagggc
tccgacggtacggagcgcgccgttcaccgcgtgcagtatggcgcgcggatgaaagtcgat
gagggcgatcagatcaaacgcggccagcgcatcgccgaatgggatccctatacgcggccg
atcctgaccgaggtcgacggcttcatcggattcgaggatcttgtcgaaggagcctccatg
acggagaccgtcgacgaggcgaccggcattgcaaagcgcatggtcattgactggcgcctc
aaccagcgttccgccacgttgaagcccgcaattgtgatcaaggcggccgacggcaagatc
agcaaactgcagcgtggcggcgacgcccgctacacgctgccggtcgaatcgatcatcggc
gttgatccgggtggcgttgtacgcgccggcgacatcatcgcgcgcatctcgatggagtca
gccaagacgcgcgacatcaccggcggtctgccacgcgtcgccgaattgttcgaggcgcgc
cggccgaaggatcatgcgatcatcgccgaggcctcaggcacggttcagttcggacgcgac
tataagaacaagacccgcatctcgatcatcccgaacgaggaagacgccgagccgatcgaa
tatctgatcccgaaaggcaaacacatccatcttcaggacggagacgtcgtggagaagggg
gattacatcgtcgacggcaatccggcgccgcacgacattctggcgatcaagggagtcgag
gagctcgcggcttatctcgtgaacgagattcaggaagtctatcgtctgcagggcgtcgcc
attaacgacaagcacatcgaagtgatcgtcaggcaaatgttgcagaaggttgacatcgtc
gatcccggcgacaccgattttctcgcaaatgagcaggtcgatcaggtcgaactcgaggaa
gccaacgccaaggcgctcgaacagggcggcaagccagcaacaggcacgccggttctgctc
ggcatcaccaaggcctcgttgcagacgcgttcgttcatctccgccgcttccttccaggag
acgacccgcgtgctgaccgaagccgccgtcaacggcaaggccgacacgctcgaaggcttg
aaggagaacgtcatcgtcggtcgcctgatcccggcgggcaccggcgcggcgatggccaaa
ttgcggcgcgtggcggcgatgcgcgacgagctgattctggcgcaaaaaggcgagacatcg
cgagaggccgcgccgaccccgctgctgccagccgctgttccggcggcccaggactga
DBGET
integrated database retrieval system
