Methylosinus trichosporium: CQW49_13100
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Entry
CQW49_13100 CDS
T05155
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mtw
Methylosinus trichosporium
Pathway
mtw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CQW49_13100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtw03019
]
CQW49_13100
03009 Ribosome biogenesis [BR:
mtw03009
]
CQW49_13100
Enzymes [BR:
mtw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CQW49_13100
Messenger RNA biogenesis [BR:
mtw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CQW49_13100
Ribosome biogenesis [BR:
mtw03009
]
Prokaryotic type
rRNA processing factors
CQW49_13100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ATQ68717
UniProt:
A0A2D2D150
LinkDB
All DBs
Position
complement(2740711..2743659)
Genome browser
AA seq
982 aa
AA seq
DB search
MANKMLIDASHPEETRVVVLRGNRVQEFDFEAADKKPLRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPVADRIALLEEESRAHQQEDEEPRAHGGRRRSRRRHDSA
EKRAASGDSVTSENAPADEEAGEAPESIEALAPIESSAAESEPADQGDALAAATASEKAP
SETVAVEPAEAPHGEAAEPISVDPEGFSVVESGHVEEPPVDLERDHELKARRQDERDEEH
EHERGEARRRVGDEEREDEEEHEDEEEHVEHIGGDAMDEAPYRATRPRRQYKIQEVIKRR
QVLLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITDGADRKRLKEIVQ
ELEVPEGMGVILRTAGATRTKAEVKRDFEYLLRMWESVRELTLRSSAATLVYEEGSLIKR
AIRDLYGRDVEEVIVSGEESYREAKDFMRMLIPSHAKNVRLYREPTPIFASAGAESQLDA
LFSNQVTLKSGGYLVINQTEALVAIDVNSGRSTREHNIEDTALRTNLEAADEVARQLRLR
DLAGLIVVDFIDMEEGRNNRAVERRLKDALKNDRARIQVGRISHFGLLEMSRQRIRAGVL
EGSTVPCPHCAGAGTVRSTASIALHVLRVLEDALIKSAAHDIILRTRTVVALYILNQKRT
HLQGLERRFGVAITVSADDSLTGTSYHALERGEPASGVRELPAAQQPLRAGAPPVDLEDE
IEEIDEVETTELEAREREERPVAAQRPPQLGDDDADSQQRSRRRRRRRGRGNGLGGGDGV
AAQPGAEQPSDEGLAMVAEIDGVPTQTGEGSRPNERGSRGGRRRAGRWTRSTPLGQEYRD
QGLPLEGEAADAANGADAEAIALAPVEPTPEPTPEAPAPVSAAEPAAPPAADTPIEAPRR
EVSTQEASSDEAPAREAPSAEAPPAAAAETRAPEPAPEPIHEAAAPPPPREPTETVITQA
DPDRPKKGGWWQRAKASLGGDQ
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaaaatgctcatcgacgcatcccacccggaagagacccgggtggtggtgctg
cgcggtaaccgcgtccaggaattcgacttcgaagccgccgacaagaagccgttgcgcggc
aacatctatctcgccaaggtcacgcgcgtggagccgtcgctgcaggcggccttcgtcgac
tacggcggcaatcgtcacggcttcctcgccttcgccgagatccatcccgactattaccaa
atcccggtcgccgaccgcatcgccctcctcgaggaggagagccgcgcgcatcagcaggag
gacgaggagccgcgcgcccatggcggccgccgccgctcccggcgccgccatgacagcgcc
gagaagcgcgccgcctcgggcgacagcgtcacgtccgaaaacgctcccgcggacgaggaa
gcaggagaggcgccagaatcgatcgaggcgctcgcgcccatcgaatcctccgcggccgag
tccgagcccgcggaccagggcgacgccctcgccgctgcgaccgcgagcgagaaagcgccg
tcggagaccgtggccgtcgagccggccgaagccccgcatggcgaggcggccgagccgatc
tcggtcgatccggaaggcttcagcgtcgtcgagagcggccatgtcgaggagccgccggtc
gatctcgagcgcgaccacgagctgaaggcccgccgtcaggacgagcgcgacgaggagcac
gagcacgagcgcggggaagctcgccgccgcgtgggcgacgaggagcgcgaggacgaagaa
gagcacgaagacgaagaagagcatgtcgagcatatcggcggcgacgccatggacgaggcg
ccctaccgcgccacacgtccgcgccggcagtacaagattcaagaggtcatcaagcgccgc
caggtgctgctcgtgcaggtcgtcaaggaggagcgcggcaacaagggcgcggcgctcacc
acttatctctcgctcgccggccgctattcggtgctgatgcccaacaccgcccgcggcggc
ggcatctcccgcaagatcaccgacggagccgaccgcaagcgcctcaaggagatcgtgcag
gagctcgaggtgccggagggcatgggcgtcatcctgcgcaccgccggcgcgacgcgcacc
aaggccgaggtcaagcgcgacttcgaatatctgctgcgcatgtgggagagcgtgcgcgag
ctgacgctgcgctccagcgccgcgacgctcgtctatgaggaaggctcgctgatcaagcgc
gccattcgcgacctctatggccgcgacgtcgaggaggtgatcgtctcgggggaggagtcc
tatcgcgaggccaaggacttcatgcgcatgctcattccgagccatgcgaagaatgtccgg
ctctatcgcgagccgacgccgatcttcgcctcggccggcgccgagtcgcagctcgatgcg
ctgttctccaatcaggtgacgctgaagtcgggcggctatctcgtcatcaatcagaccgag
gcgctggtcgccatcgatgtgaactcgggccgctccacgcgcgagcacaatatcgaggac
acggcgctgcgcaccaatctggaggcggccgacgaggtcgcccgccagctgcgcctgcgc
gatctcgccggcctcatcgtcgtcgatttcatcgacatggaggagggccgcaacaatcgc
gccgtcgagcgccggctgaaggacgcgctgaagaacgaccgcgcccgcatccaggtcggc
cgcatctcgcatttcggcctgcttgaaatgtcgcgccagcgcatccgcgccggcgttctc
gaaggctcgacggtgccgtgtccgcattgcgccggcgccggcacggtgcgctccaccgcc
tcgatcgcgctgcatgtgctgcgcgtgctcgaggacgcactcatcaagagcgcggcgcat
gacatcatcctgcgcacccgcacggtggtggcgctctacatcctcaatcagaagcgcacg
catctgcaggggctggagcggcgcttcggcgtcgccatcacggtctcggcggacgacagc
ctgaccggcacatcctatcacgcgctggagcgcggcgagccggcgagcggcgtgcgcgag
ctgccggcggcgcagcagccgctgcgcgccggcgcgccgccggtcgatctcgaggacgag
atcgaggagatcgacgaggtggagacgaccgagctcgaggcgcgcgagcgcgaggagcgt
ccggtcgccgcccagcgaccgccgcagctcggcgacgacgacgccgacagccagcagcgc
tcgcgccgccgccgtcgccgccggggtcgcggcaatgggctcggaggcggcgacggcgtg
gccgcccagccgggcgccgagcagccttccgacgaagggctggcgatggtcgccgagatc
gacggcgttccgacgcagacgggcgaaggctcgcggccgaacgagcggggcagccgcggc
ggccgtcgccgcgccggtcgttggacgcgctccacgccgctggggcaggaatatcgcgac
cagggcctgccgctcgagggcgaagccgccgacgccgcaaatggagcggatgcggaggcc
atagcgctcgctccagtcgagccgacgcccgagccgacgcccgaggctccggcgcctgtg
agcgccgcggagccggccgctccgccggcggccgacacgccgatcgaggcgccgaggcga
gaagtttcgacgcaagaggcttcgagtgacgaggcgccggcccgtgaggccccgagcgcc
gaagcgccgccggccgccgcggccgagacgcgagcgccagagcctgcgccggagccgatc
catgaggccgccgcgccgccgcccccgcgcgagccgaccgaaaccgtcatcacccaggcc
gatcctgaccggccgaagaagggcggctggtggcagcgcgccaaggcctcgctgggcggc
gatcaataa
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