Mycolicibacterium tokaiense: MTOK_06750
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Entry
MTOK_06750 CDS
T06987
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mty
Mycolicibacterium tokaiense
Pathway
mty03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MTOK_06750 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mty03400
]
MTOK_06750 (mfd)
Enzymes [BR:
mty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MTOK_06750 (mfd)
DNA repair and recombination proteins [BR:
mty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MTOK_06750 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
LSDAT_prok
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBY84893
LinkDB
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Position
complement(708139..711789)
Genome browser
AA seq
1216 aa
AA seq
DB search
MTAPGHPSVQTPIAGLVDLALTAPTFAELVDRAEQRPDELALVGPSSAQVFVASALAQQG
PLLVVTATGREADDLTAELKGVFGDAAALFPSWETLPHERLSPGVDTVGARLMLLRRLSH
PDDARLGPPLRVVVTTARSLLQPMTPDAAKVEPVTLAVGAELDFEQVITKLAELAYTRVD
MVGKRGEFAVRGGILDVFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIPVDTLVAV
ACRELLLTEEVRRRAAELVTEHPVSDNHVSGTVGEMLAKLADGIPVDGMEALLPVLRRDD
LVLLTDQLAPGTPVLVCDPEKVRTRAADLIKTGREFLEATWSVAAVGGDAPIDVEQLGGS
GFRELGEARAAARKAGHPWWTLSQLPDESAIELDVRSAPSARGSQANAEEIFAMLRAHCA
TGGSAAVVTPGTGTANRVCEQLADADTPAALLDAGATPKPGVVGVLKGPLHTGVILPGAN
LVVITETDLTGNRVAASEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGKFVEMTERVVG
GARREYLVLEYASAKRGGGSDRLYVPMDSLDQLSRYVGGTAPTLSKLGGSDWTNTKTKAR
RAVREIATELVALYAKRQAAPGFAFPPDTPWQNEMEDAFGFTETVDQMTAITEVKADMER
PVPMDRVICGDVGYGKTEIAVRAAFKAVQAGKQVAVLVPTTLLADQHLQTFTNRMAGFPV
TVKGLSRFTDPGESRKVVDGMADGSVDVVIGTHRLLQTAVRWKDLGLVIVDEEQRFGVEH
KEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV
TAALRRELLRDGQVFYIHNRVSSIDSAAAKVRALVPEARVVVAHGQMPEEQLEKTVEGFW
NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYSP
DKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL
VGEAVEAYRAAADGETVSGTEEPKEVRIDLPIDANLPPEYIDSDRLRLEGYRRLAAATSD
ADVASVVEELTDRYGPLPEEALRLVAVARLRLLCRSYGITEVSATGSAGQPSTLRISPLT
LMDSGQLRLKRMYPGANYRATTSTIQVPIPRAGSGIAAPRIRDLELAQMVADLILALDGK
PKGEVDITKLGAEVAP
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcacccttctgtccagaccccgatcgcgggtcttgtcgatctggcg
ctgactgcgcccaccttcgccgagctggtcgaccgcgccgagcagcgtcccgatgagctc
gcgctcgtcggccccagcagcgcccaggtgttcgtcgcgtccgcgctggcgcagcagggg
ccgctgctggtggtcaccgccaccggccgagaggccgacgacctgaccgccgagctcaag
ggtgtcttcggtgacgccgcggcactcttcccctcctgggagacgctgccgcacgagcgc
ctctcgccgggtgtggacaccgtgggtgcccgcctgatgcttctgcgccgactcagccac
cctgacgacgcccgtctcggaccgccgttgcgagtcgtggtcaccacggcgcgttcactg
ctgcagccgatgacgccggatgcggccaaggtcgagcccgtcacgttggcggtgggtgcc
gagttggacttcgagcaggtcatcaccaaactcgccgagctggcctatacccgtgtggac
atggtgggcaagcgcggcgaattcgccgttcgtggcggcattctggacgtgttcgcgccc
accgccgaacacccggtgcgtgtcgagttctggggcgacgagatcaccgagatgcgaatg
ttctcggtggccgaccagcgatccatccccgagatcccggtggacacgctggtcgccgtg
gcgtgccgtgagctgctgctcaccgaggaggtgcgccgacgcgcggctgaactggtcacc
gaacatccggtcagcgacaaccatgtcagcggaacagtgggcgagatgttggccaagctg
gccgacggcatcccggtggacggcatggaggccctgctgcccgtgctgcgccgcgacgat
ctggtgctgttgaccgatcagctggcccctgggacgccggtgctcgtgtgcgaccccgag
aaggtccgcacccgggcggccgatctgatcaagaccggccgtgagttcctcgaagccacc
tggtcggtggccgcggttggcggcgacgcgcccatcgacgtcgagcagttgggcggctcg
ggattccgggagctcggcgaagcccgggccgccgcccgcaaggccggccacccctggtgg
accctgagccagttgcccgacgaatccgcgatcgaactcgatgtccggtccgcgccgtcg
gcccgcggcagccaggcgaacgccgaagagatctttgcgatgttgcgcgcgcactgcgcc
accggtgggtcggccgccgtcgtcacccccggcaccggcacggccaaccgggtgtgtgag
cagctggccgacgccgacaccccggccgccctgctggacgccggcgccacgcccaaaccc
ggtgtggtgggcgtgctcaagggcccgctgcacaccggcgtgatcctgcccggcgccaat
ctggtggtcatcaccgagaccgacctgaccgggaaccgggtcgccgcctcggagggcaaa
cgccttgcggccaaacgccgtaacaccgtcgatccgctggcgctgacggccggtgacctg
gtggtgcacgaccagcacggcatcggcaagttcgtcgagatgaccgagcgggtggtcggc
ggagcgcggcgcgagtatctggtgctggagtacgccagcgccaagcgcggcggaggttcc
gaccggctgtatgtccccatggattcgctcgatcagctgtcgcggtacgtcggtggcacc
gcccccacactgagcaagctcgggggtagcgactggacgaacacgaagaccaaggcgcgc
agggccgttcgcgagatcgccaccgagttggtggcgctgtacgccaagcggcaggcggca
ccgggtttcgccttcccgccggacaccccgtggcagaacgagatggaagatgcgttcggc
ttcaccgagaccgtcgaccagatgacggccatcaccgaggtgaaggccgacatggagcgt
ccggtcccgatggaccgcgtgatctgtggcgacgtggggtacggcaagaccgagatcgcc
gtgcgcgctgcgttcaaagcggtgcaggccggcaagcaggtcgcagtgttggtgcccacg
acgctgctggccgatcagcacctgcaaaccttcaccaaccggatggccggtttcccggtg
accgtcaaggggttgtcgcgcttcaccgacccgggggagtcgcgcaaggtggtcgacggt
atggccgacggctcggtcgatgtcgtgatcggcacccaccggctgctgcagaccgcggtg
cgatggaaggacctcggcctggtgatcgtcgacgaggagcagcggttcggcgtcgagcac
aaggagcacatcaagagcctgcgctcccacgtcgacgtgctgaccatgagcgccaccccg
attccgcgcacgctggagatgagcctggccggcatccgcgagatgtcgaccatcctgact
ccgccggaggaacgctatccggtgctgacctatgtgggaccccacgacgacaagcaggtg
acagcggcgctgcgccgggagctgctgcgcgacgggcaggtgttctacatccacaaccgg
gtcagctccatcgactccgcggcggccaaggtgcgcgccctggtacccgaagccagagtt
gttgtggcccacggccagatgccggaagagcagctggagaagaccgtcgagggcttctgg
aaccgcgagtacgacatcctggtctgcaccaccatcgtggagaccggcctggacatcagc
aacgccaacaccctgatcgtggagcgcgccgacaccttcggactgtcgcagctgcatcag
ttgcgcggtcgggtgggacgctcccgcgagcgtggctacgcctacttcctgtactcgccg
gacaagccgctgaccgagacggcctacgaccgcctggccaccatcgcccagaacaacgaa
ctgggtgccggcatggccgtggcgatgaaggacctggagatccgcggtgcgggcaacgtg
ctgggtgccgagcagtccggtcacgtcgccggtgtcgggttcgatctctacgtgcggctg
gtgggcgaggcggtggaggcctaccgcgcggccgccgacggtgaaaccgtctcgggcaca
gaggaacccaaagaggtcaggatcgacctgccgatcgacgccaacctgccgccggagtac
atcgacagtgaccggctgcgcctggagggctaccggcggctggccgcggccaccagcgac
gccgacgtggcctcggtggtcgaggagctcaccgaccgctacggcccgctgcccgaggag
gcgctgcggctggtcgcggtggcgcggctgcggctgctgtgccgcagctacggcatcacc
gaggtgtcggccaccggctcggcggggcagccgtccacgctgcggatttccccgttgacg
ctgatggattccggacagctgcgcctcaagcgcatgtatcccggtgccaactaccgggcc
actacctccaccatccaggtgccgatcccgcgggcgggcagtggtatcgccgccccgcgc
atccgggatctcgaactggcgcagatggtggccgacctgatcctcgcgctggacgggaaa
ccgaagggtgaggtcgacatcacgaaactcggggcggaggtggccccgtga
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