Mycolicibacterium tokaiense: MTOK_13120
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Entry
MTOK_13120 CDS
T06987
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mty
Mycolicibacterium tokaiense
Brite
KEGG Orthology (KO) [BR:
mty00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mty03019
]
MTOK_13120 (hrpA)
Enzymes [BR:
mty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MTOK_13120 (hrpA)
Messenger RNA biogenesis [BR:
mty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MTOK_13120 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
NACHT
nSTAND_NTPase5
nSTAND3
T2SSE
ABC_tran
DUF6818
Motif
Other DBs
NCBI-ProteinID:
BBY85530
LinkDB
All DBs
Position
complement(1363662..1367711)
Genome browser
AA seq
1349 aa
AA seq
DB search
MAGGHRHRSGGGGVGGTQRATRSARPGARTSRRPVALAAVPADILGRVSAKSSSELYPRL
DGLTYRDADRLRRRLRNLRGTPDPAKLDQIEQQIVTGEALVATRLAAVPQITYPDLPVSA
LRGDIATAIRDHQVVVVAGETGSGKTTQLPKICLELGRGIRGTIGHTQPRRLAARTVGQR
IADELGSPLGETVGYTVRFTDQVSDRTLIKLMTDGILLAEIQRDRRLLRYDTLILDEAHE
RSLNIDFLLGYLRELLPRRPDLKVIVTSATIEPGRFARHFGDAPIVEVSGRTYPVEIRYR
PLEVVVNDVDDDDPDDPDHDQVRTVLRDQTEAIVDAVAELAAEPPGDVLVFLSGEREIRD
TAEALRGAPGFNPHTTEVLPLYARLPTAEQQKVFAPHAGRRIVLATNVAETSLTVPGIRY
VVDPGTARISRYSRRTKVQRLPIEPISQASAAQRSGRSGRVAPGVAIRLYSEEDFETRPR
YTDPEILRTNLAAVILQMAALQLGEIEQFPFLDPPDSRSIRDGVQVLQELGAFDRQGTLT
DVGRRLAQLPLDPRVGRMILAAHDEGCVREILVLAAALSIPDPRERPPEQQEAARQKHAR
FADETSDFLSYLNLWQYLSEQRKERSGSSFRRMCREEFLHYLRIREWQDLTGQLRSIARD
LGIRESDEPAPSAAIHRALSAGLLSHVGVREGETRDFLGARNTRFVLAPGSVLTKKPPRW
VVVAELVETSRLYGRTAARIEPEALEKVAEHLVQRTYSEPHWEAKRGAVMAFERVTLFGL
PLVPRRKVGYAQVDPVLSRELFIRHALVEGDWQTRHHFFRDNTALLRELDEMEERARRRD
LLITDDELYALYDARIPETAVSARHFDAWWKKQRHQTPELLTFTREELLRGDDAAADRPD
TWRSGDMSLPLTYRFEPGAADDGVTVHVPVEVLAGLGGGEFAWQVPALREELVTALIKSL
PKDLRRNFVPAPDTAKAVLPDLSPERGSLLESLQRELKRRSGILVPIDAFGLEKLPAHLR
VTFAVETPDGTEVARGKDLDVLQERLAAPVRRAVAEAVAGELERSGLTAWPDDLIEIPKT
VSRTSGAHTVRGFPALVDTGAGVDLRVFATAAEQAAAMGPGTRRLLRLVTPSPGKNVERA
LDPRTRLQVGTNPDGSLAALIDDCADAAVAVIAPDPTWRRAEFDAARQKVAAQLVPTTLD
IIKRVQKVLVAAHEAQLALPQRPTPAQAEAVDDIRAQLKVLLPKGFVARTGAARLGHLTR
YLTAVVRRLERLPQAPEADRERLHRILAVQDAYDDLRQALSPMRAAAKDVRDIGMLIEEL
RVSLWAQQLGTAVPVSEKRIYKAIDAVTP
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcggccatcggcaccgcagtggtggcggtggtgtgggtggtacgcagcgtgcg
acgcgttcggcccgccccggtgcccgcacaagccgacgtcccgttgccctagcggcggta
ccagcggatatcctcggtcgagtgtccgcgaagtccagcagtgagctctacccgcggctg
gacggtctgacctaccgcgacgccgaccggctgcggcgacggctacgcaatctgcgcggc
acgcccgaccctgccaagctggaccagatcgagcagcagatcgtcacgggcgaagcgctg
gtggccaccaggctggcggccgtcccgcagatcacctacccggacctcccggtcagcgcg
ctgcgcggcgacatcgccacggccatccgggaccatcaggtagtggtggtcgccggggag
accggctcgggcaagaccacgcagctgcccaagatctgcctggagttgggccgcggtatc
cgcggcaccatcgggcacacccagccccggcgtctggccgcgcgcacggtcggacagcgc
atcgccgacgaactcggcagtccactcggcgagacggtgggctacaccgtgcgcttcacc
gatcaggtgagcgaccgcacgctgatcaaactgatgaccgacggcatcctgctcgccgag
atccagcgggaccgccggctgctgcgctacgacaccctgattctcgacgaagcccacgag
cgcagcctcaacatcgacttcctgctggggtatctgcgggaactgctgccccggcggccc
gacctcaaggtcatcgtcacctcggcgaccatcgaaccgggccgtttcgcacgacacttc
ggcgatgcgcccatcgtcgaggtgtccgggcgcacctacccggtcgagatccgctaccgg
ccgctggaagtcgtcgtcaacgacgtcgacgacgacgatcccgacgaccccgatcacgat
caggtccgcaccgtgctgcgggaccagaccgaggcgatcgtcgacgcagttgccgaactg
gcggccgagccgccgggtgacgtactggtcttcctctccggcgagcgcgagatccgcgac
accgccgaagcattgcgcggagcgccgggcttcaacccgcacaccaccgaggtgctgccg
ctgtatgcccggctgcccaccgccgagcagcagaaggtgttcgcaccccatgccggtcga
cgaatcgtgttggccaccaacgtcgccgagacgtcgctgaccgtgcccggcatccggtac
gtggtggaccccgggaccgcgcgcatctcccgctacagccgacgcaccaaggtgcagcgg
ctgcccatcgagcccatctcgcaggcctcggccgcacagcgctcgggtcgctcggggcgg
gtggccccaggcgtggcgatccggctctacagcgaagaggacttcgaaacacggccccgc
tacaccgatccggagatcctgcgcaccaatctggccgcggtgatcctgcagatggccgcg
ctgcagctgggggagatcgaacagttcccgttcctcgatccgccggacagccgcagcatc
cgcgacggtgtgcaggtgctgcaggaactcggcgccttcgaccgccagggaaccctcacc
gacgtcggccgccggctcgcccagctgccacttgacccgcgggtgggccggatgatcctg
gccgcccacgatgaaggttgcgtccgcgagatcctggtgctcgcagcggcattgtcgata
cccgatccccgggagcgccccccggagcagcaggaggcggcccggcagaaacacgcccgc
ttcgccgacgagacgtccgatttcctgtcctacctgaacctgtggcagtacctctccgaa
cagcgaaaggagcgttccggcagctcgtttcgccggatgtgccgagaagagttcctgcac
tacctgcggatcagggagtggcaggacctcaccggccagttgcgcagcatcgcccgggat
ctgggtatccgggaatccgacgagccggccccatccgcggccatccaccgggctctgtcg
gcgggcctgctgtcgcacgtcggtgtccgcgaaggcgagacgcgagactttttgggggcg
cgcaacacccggttcgtgctggcgccgggctcggtgctgacgaagaagccgccgcgctgg
gtggtggtggcggagctggtcgagaccagcaggctctacggccgcaccgccgcgcgcatc
gaacccgaggcgctggagaaggtggccgagcatctggtgcaacgcacctacagtgagccg
cactgggaggccaagcgtggcgctgtgatggcgttcgagcgggtgacattgttcgggctg
ccgctggtgccccggcgcaaagtgggctacgcgcaggtggacccggtgctgtcgcgggag
ttgttcatccggcacgcgctggtcgagggagactggcagacacggcaccacttcttccgc
gacaacaccgcgctgctgcgcgaactcgacgagatggaggaacgggcccgcaggcgcgac
ctgctgatcaccgacgacgagctgtacgcactctacgatgcccggattcccgagactgcc
gtgtccgcacgtcatttcgacgcctggtggaaaaaacaacggcatcagaccccggagttg
ctgaccttcacccgcgaggagttgctgcggggtgacgacgcggccgccgaccgccccgac
acctggcgcagcggagacatgtccctgccgttgacctaccgattcgagcccggcgccgcc
gacgacggcgtgacggtccacgtcccggtcgaggtgctggccgggctgggtggaggcgaa
ttcgcctggcaggtaccggcgctgcgcgaagagctggtcaccgccctgatcaagtcgctg
cccaaggacctgcgccgcaacttcgtgcccgcgccggacaccgccaaggcggtgctgccg
gatctctcgccggagcgtggatcactgctggagagcctgcagcgagaactcaagcgccgc
agcggcatcctggttcccattgacgccttcggcctggagaagctgcccgcgcacctgcgg
gtcacgtttgccgtcgaaacccccgacggtaccgaggtggcgcgcggcaaggatctcgac
gtgctgcaggaacggctggcggcaccggtgcgccgggccgtcgccgaagcggtggccgga
gaactcgagcgctccggcctcacggcgtggcccgacgatctgatcgagatcccgaaaacg
gtgtcccgcaccagcggagcgcatacggtgcgcggattcccggcgctggtggacaccggc
gccggcgtcgatctgcgggtgttcgccaccgcggccgaacaggccgcggcgatggggccg
gggacccggcggttgctgcgcctggtcaccccctcgccgggcaagaacgtcgaacgggca
ctggacccgcgcacccggctgcaggtcggcaccaaccccgacggctcgctggcggcgctg
atcgacgactgcgccgacgctgcggtggcggtgatcgcgcccgacccgacatggcgccgt
gctgaattcgacgccgcccggcagaaagtggcggcgcagttggtgcccaccacactggac
atcatcaagcgggtgcagaaggtgctggtggccgcgcacgaggcgcagctggcgctgccg
cagcggcccacgccggcgcaggcggaggccgtcgacgacattcgggcgcagctgaaggtg
ttgctgcccaagggtttcgtggcgcggaccggggcggcgcgattggggcacctgacccgc
tacctcaccgccgtggtccgccgcctcgagcggctgccgcaggctccggaggccgaccgc
gaacgtctgcaccgaatactggccgtgcaggacgcctacgacgacctgcggcaggcactg
tcaccgatgcgggccgccgccaaggacgtccgcgacatcgggatgctgatcgaagagctg
cgggtgagcctctgggcacaacagctcgggacggcggtgccggtgagcgagaagaggatc
tacaaggcgatcgacgccgtcaccccgtga
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