Mycolicibacterium tokaiense: MTOK_31770
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Entry
MTOK_31770 CDS
T06987
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mty
Mycolicibacterium tokaiense
Pathway
mty03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mty00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MTOK_31770 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mty03021
]
MTOK_31770 (rpoC)
03400 DNA repair and recombination proteins [BR:
mty03400
]
MTOK_31770 (rpoC)
Enzymes [BR:
mty01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MTOK_31770 (rpoC)
Transcription machinery [BR:
mty03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MTOK_31770 (rpoC)
DNA repair and recombination proteins [BR:
mty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MTOK_31770 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BBY87395
LinkDB
All DBs
Position
3242584..3246531
Genome browser
AA seq
1315 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMVVEKKSVADQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAVKQLIVDENL
YRELVDRYGEYFTGAMGAESIQKLIETFDIEAEAESLRDTIKNGKGQKKLRALKRLKVVA
AFQTNRNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEVPGDLGEFT
AAATDSPETGTYSSPAEAIMAMDRGALSVRAKIKVRMTRLRPPAEVEAELFPEGWKPGDG
WTAHTTLGRVMFNELLPVSYPFVDKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMADVLVPPQKAAILDRYEGEADGIEKKYQRGALTADERREALVKIWQEA
TDEVGKALEEYYPADNPITLLPKSGATGNMTQVRNLAGMKGLVTNPKGEYIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGIMVAI
AEKTDDGALLRDPHVETSAFARTLASDAVDANGNVVVERGHDLGDPAIDALLAAGITDVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVG
GDITGGLPRVQELFEARVPRNRAPIADVTGRVRLEETDKFYKITIVPDDGGEEVVYDKLP
RRQRLRVFKHEDGSERPLAEGDHIEVGQQLMEGSADPHEVLRVQGPRQVQVHLVNEVQEV
YRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERSEFESENRRVVAEGNEPA
AGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLMGLKENVIIGKLIPAG
TGIARYRDIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgtatcggtctcgcgaccgcggacgacatc
cgcaactggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgtcgcgagcggatgggccacatcgagctggccgcgccc
gtcacgcacatctggtacttcaagggtgtgccctcgcgtctgggctacctgctggacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtgatcaccagcgtcgac
gaggagatgcggcacaacgagctctccacgctcgaggccgagatggtcgtcgagaagaag
tcggtcgccgatcagcgtgacgccgacctggaggcccgcgcccagaagctggaagcggac
ctggccgagttggaggccgaaggagccaagtccgacgtgcgccgcaaggtgcgcgacggc
ggcgagcgcgagatgcgtcagctgcgtgaccgggcccagcgtgagctggaccggctcgac
gagatctggaccaccttcaccaagctggccgtcaagcagctcatcgtggacgagaacctc
taccgcgagctggtcgaccgctacggcgagtacttcaccggcgccatgggtgcggagtcg
atccagaagctgatcgagaccttcgacatcgaggccgaggcggagtcgctgcgcgacacc
atcaagaacggcaagggccagaagaagcttcgcgccctcaagcgcctgaaggtcgtcgcg
gcgttccagaccaaccgcaactcgcccatgggcatggtgctcaacgccgtcccggtgatc
ccgccggagctgcgtccgatggtccagctcgacggtggccgcttcgccacctcggacctc
aacgacctataccgccgtgtgatcaaccgcaacaaccggctcaagcgactgatcgatctg
ggtgcgcccgagatcatcgtcaacaacgagaagcgcatgcttcaggagtcggtggacgcg
ctgttcgacaacggccgtcgtggccgtccggtcaccgggccgggcaaccgtccgctgaag
tcgctgtccgatctgctcaagggcaagcagggccgcttccgtcagaacctgctcggtaag
cgcgtcgactactccggccgttcggtcatcgtggtgggcccgcagctcaagctgcaccag
tgcggtctgccgaagctgatggcactcgagctgttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgtcagcgt
ccgcaggtgtgggatgtcctcgaagaggtcatcggcgagcaccccgtgctgctcaaccgt
gcacccacgctgcaccgcctcggtatccaggccttcgagccgcagctggtcgaaggcaag
gccatccagctgcacccgctggtctgtgaggcgttcaacgcggacttcgacggtgaccag
atggccgtgcaccttccgctgtcggcggaggcgcaggccgaggcgcgcatcctgatgctg
tcgtcgaacaacatcctgtcgcccgcgtcgggccggccgctggccatgccccgtctggac
atggtgaccgggctgtacttcctcaccaccgaggtgcccggcgatctcggcgaattcacc
gccgcggccaccgactccccggagaccgggacgtactcctcgcccgccgaggccatcatg
gcgatggaccgcggtgcgctgagcgtgcgcgccaagatcaaggtgcggatgacgcggctg
cgtccgccggccgaggtcgaggccgagctgttcccggagggctggaagccgggcgacggc
tggaccgcgcacaccacgctgggccgcgtgatgttcaacgaactgctgccggtgagctac
ccgttcgtcgacaagcagatgcacaagaaggtgcaggccgcgatcatcaacgatctggcc
gagcgctacccgatgatcgtcgtcgcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacgcgttcgggcgtcacggtctcgatggccgacgtgctggtgccgccgcag
aaggcggccatcctcgatcgctacgaaggcgaagccgacgggatcgagaagaagtaccag
cgcggtgccctgacggccgacgagcggcgtgaagcgctggtcaagatctggcaggaagcc
accgatgaggtcggtaaggcgctggaggagtactacccggcggacaacccgatcaccctg
ctgcccaagtcgggtgccaccggcaacatgacgcaggtgcgcaacctggccggcatgaag
ggtctggtgaccaacccgaagggtgagtacatcccgcgtcccatcaagtcctcgttccgc
gagggcctgacggtgttggagtacttcatcaacacccacggtgcacgtaagggtctggcc
gacaccgcgctgcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtgtcg
caggacgtcatcgtccgcgagaccgactgcggcaccgaacgcggcatcatggtcgccatc
gcggagaagaccgacgacggtgcactgctgcgggatccgcacgtggagacctcggcgttc
gcccggacgctggcctccgacgcggtggatgccaacggcaacgtggtggtggagcgtgga
catgacctgggcgacccggccatcgacgcgctgctggctgccggcatcaccgacgtcaag
gtgcgttcggtgctgacctgcaccaccggcaccggcgtctgcgccacctgctacggccgt
tcgatggccaccggcaagctggtcgacatcggcgaggccgtcggcatcgtcgccgcccag
tccatcggtgagcccggcacgcagctgaccatgcgtaccttccaccagggtggcgtcggt
ggcgacatcaccggtggtctgccccgtgtgcaggagctgttcgaggcccgtgttccgcgc
aaccgtgccccgatcgccgacgtcaccgggcgggtccgcttggaggagaccgacaagttc
tacaagatcaccatcgttcccgacgatggtggcgaggaagtcgtctacgacaagctgccg
cgtcgtcagcgtctgcgcgtgttcaagcacgaggacggctccgagcgtccgttggctgag
ggtgaccacatcgaggtcggccagcagctgatggaaggttcggccgacccgcacgaggtg
ctgcgtgtgcagggcccgcgtcaggtccaggtgcacctcgtcaacgaggtgcaggaggtc
taccgcgcccagggtgtgtcgatccacgacaagcacatcgaggtgatcgtccggcagatg
ctgcgccgggtgaccatcatcgattccggtgccacggagttcctgcccggatcgctgacc
gagcgcagcgagttcgagtcggagaaccgtcgcgtggtggcggagggcaacgagcccgcc
gccggccgtccggtgctgatgggtatcaccaaggcgtcgctggccacggattcgtggctg
tcggcggcgtcgttccaggagaccactcgcgtgctgaccgatgcggcgatcaactgccgc
agcgacaagctgatgggtctgaaggagaacgtgatcatcggcaagctgatcccggccggt
accggtatcgcccgctaccgcgacatccaggtgcagcccaccgaagaggcccgcgctgcg
gcgtacacgatcccgtcttacgaggatcagtactacagcccggacttcggccaggccacc
ggtgctgcggttccgctggacgattacgggtattccgactaccggtag
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