Mucilaginibacter cryoferens: HDF20_07265
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Entry
HDF20_07265 CDS
T11696
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
muf Mucilaginibacter cryoferens
Pathway
muf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
muf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HDF20_07265 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
muf03021
]
HDF20_07265 (rpoC)
03400 DNA repair and recombination proteins [BR:
muf03400
]
HDF20_07265 (rpoC)
Enzymes [BR:
muf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HDF20_07265 (rpoC)
Transcription machinery [BR:
muf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HDF20_07265 (rpoC)
DNA repair and recombination proteins [BR:
muf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HDF20_07265 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
XPY92412
LinkDB
All DBs
Position
1687232..1691518
Genome browser
AA seq
1428 aa
AA seq
DB search
MSYKKDNKIKSNFTTITISLASPESILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKRLDLIIYYERYVVIQAGIKESDGINKMDFLTEEEYLDVLDTLPKENQYLDD
KDPQKFVAKMGAEALEELLKRLDLDELSFSLRHQAANETSQQRKNEALKRLQVVEAFRDA
KTRIENNPEWMIVKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLKLHECGLPKDMAAELFKPFIIRKMIERGVVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQSFQPKLVEGKAIQLHPLTCTAFNADFDGDQM
AVHVPLGNAAILEAQVLMLASHNILNPANGTPITVPSQDMVLGLYYITKGRKTDDGRVVK
GQGLTFYSSEEVIIAYNERKIDLHAFIKVKAFTKDRDGSIVSKIIDTTVGRVLFNEHVPV
EVGYINELLTKKSLRDIIGEVVKITGMARAAQFLDDIKELGFRMAFQGGLSFNLKDINIP
AEKVTLIETASKQVEEVMGNYNMGFITNNERYNQIIDIWTRINNRLTANVMDILSNDNQG
FNSVYMMLDSGARGSKEQIRQLAGMRGLMAKPQKSGSGGEIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVGMVDCGTLRGIYTTALKDNEDIVE
PLYDRILGRTTLHDVHDPITNELLAHAGQDITEEIGKRIENSPLEGIEIRSVLTCESRRG
VCALCYGRNLASGKRVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESQINAR
FDGIIEFENVRTVQYKTEEGVVDVVLGRSGEFRIVEEGSNKVIVTNNIPYGSYLYIQDGS
KVTKGDRICSWDPYNAVIISEFAGITTFDAVLEGITFREESDEQTGHREKVIIDTRDKTK
NPVIQIADNKGNIIKGYNIPVGAHIAVEEGEKLQTGQVIAKIPRSTGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGVVTLGGIKRGNREMTIESKDGQVKKYLVPLSKHILVQDNDF
VKAGMPLSDGSISPADILAIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFEVIVHQMMQK
VAIEDAGDTRFLEREAVDSWDFMTENDEIFDKKVVTEPGDSNTLKSGQIVSLRRLRDENS
ILKRKDLRLVEVRDAIAATSSPILQGITRASLGTKSFISAASFQETTKVLNEAAIAGKKD
LMLGLKENVIVGHLIPSGTGLREYENIRVGSQEEFDRLMASKAEEVEA
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaggataataaaatcaaaagtaatttcaccacaattactatcagcctg
gcctctcccgagtccattcttgagcgttcaagcggtgaggttttaaaaccagaaaccatc
aactacaggacctataaacctgagcgtgatggtttattctgcgagcgtatttttggtccg
gttaaagattatgagtgccattgcggtaaatacaaacgtatccgttacaagggtatagtt
tgtgatcgttgcggtgttgaagtaaccgaaaagaaagtacgtcgcgagcgcatgggccac
attaaccttgtagttcctgttgcgcacatctggtacttccggtcgttaccaaacaaaatc
ggttacttactgggcttaccaacaaaacggttagacttaattatatactacgagcgctat
gtagtaatacaggcaggtatcaaagaatcagacggaatcaacaaaatggatttccttact
gaagaagaatacctggatgtattagatactcttccaaaagaaaaccagtaccttgatgac
aaagatcctcagaaatttgttgccaaaatgggtgccgaggctttagaagaattattaaaa
cgccttgatctggatgagctttcatttagcttacgccaccaggcagcaaatgaaacttca
caacaacgtaaaaacgaagctttaaaacgtttacaggttgttgaggctttccgtgatgca
aaaaccaggatcgaaaataaccctgagtggatgatcgttaagatcgttccggttatccct
ccagaattgcgtccgttggtgcctttggaaggtggtcgttttgctacttcagatttgaat
gacctttaccgccgtgtaattatccgtaacaatcgtttaaaacgtttgatcgagatcaaa
gcaccggaagttatcttacgtaacgaaaaacgtatgttacaggaagctgtagattcgtta
tttgacaactcacgtaaagttaacgcggttaaaactgaaggtaaccgcgctttgaaatca
ctttcggatatcctgaaaggtaaacaaggccgtttccgtcaaaacttattaggtaaacgt
gtggattattctgcccgttcggtaattgttgtagggccaaaccttaaattacacgagtgc
ggtttaccaaaagatatggctgccgagctgtttaaaccatttatcattcgcaagatgatt
gagcgtggtgtggttaaaacagtaaaatctgccaaaaagattgttgaccgtaaagaccca
ttagtttgggatattttggaaaacgtattgaaaggacaccctgtattactaaaccgtgcg
cctacgctgcacaggttaggtatccagtcgttccagccaaaactggttgaaggtaaagcg
attcaattgcacccattaacctgtacggctttcaacgcggattttgacggtgaccagatg
gccgttcacgtaccactaggtaacgcggcaattttggaagcccaggtattgatgcttgca
tcacacaacattttgaaccctgccaacggtacgcctattacagtaccatcacaagacatg
gtgcttggtttgtactacataaccaaaggccgtaaaactgatgatggacgtgtggtaaaa
ggccagggcttaactttttactcgtctgaagaagtaattattgcttacaacgaacgtaaa
attgacctgcacgcctttataaaagttaaagcttttacaaaagaccgtgatggcagcata
gtaagcaaaattatagatactactgtaggtcgcgtgttgtttaacgaacatgtacctgtt
gaagtaggttacataaatgagttgcttaccaaaaaatcattacgtgatattattggcgag
gtggtgaaaattaccggtatggcacgtgcggcacaattccttgatgatattaaggagtta
ggtttcagaatggcattccagggtggtttatcatttaacctgaaggatatcaacattcct
gcagagaaagttacactgatagaaacagcttctaaacaagttgaagaggttatgggtaac
tacaacatgggtttcattaccaacaacgagcgttataaccaaattatcgatatctggaca
cgtatcaacaaccgcttaaccgcgaatgtgatggacatcctgagcaacgataaccagggc
tttaactcggtgtacatgatgcttgactctggtgcgcgtggttctaaagagcagatccgt
cagcttgcaggtatgcgtggtttgatggctaagcctcaaaaatcaggttcaggtggcgag
atcatcgaaaacccgatcctttcaaactttaaagaaggtttgtcggtattagagtacttt
atatcaactcacggtgcgcgtaaaggtttggcggatacggcgttaaaaacagctgatgct
ggttacttaacacgtaggctgcatgatgttgcccaggatatgattgttggtatggttgat
tgcggtaccttgaggggtatttacacaactgcgctaaaagataacgaagatattgtagag
ccgttatatgatcgtattttaggtcgtactactttacatgacgttcatgatcctataacc
aacgaattgttggcacatgcaggtcaggatattactgaagagattggtaagagaatagag
aactcaccgttagaaggtatcgaaattcgttcggtattaacttgcgaaagccgccgtggt
gtgtgtgctttatgctacggccgtaaccttgcaagcggtaaacgcgtgcaaaaaggtgaa
gctgtgggtgtaattgcagcacagtcaattggtgagccgggtacacagttaacattacgt
acattccacgtgggtggtaccgcatctaacattgctgcagaatcgcagatcaatgcaagg
tttgatggtatcatagaatttgaaaacgtacgtactgttcaatacaaaaccgaagaaggt
gttgttgatgtggtattaggccgttctggcgagttccgtattgttgaagaaggaagcaat
aaagttattgtaaccaacaatatcccttacggttcatacctgtacatacaagatggcagc
aaggttaccaaaggagatcgtatctgttcatgggacccatacaatgcggttatcatatca
gagtttgcaggtatcacaacgtttgatgccgtattagagggtatcactttccgtgaagaa
tctgatgagcaaacaggtcaccgtgaaaaggtaattattgatacaagagataaaaccaag
aatccggtaattcaaattgctgataataaaggcaacatcattaaaggatataacattccg
gtaggggcacacatcgctgttgaagagggtgagaaactacaaaccggacaggttattgct
aaaattcctcgttcaactggtaaaacccgggatatcaccggtggtttaccacgtgtaacg
gagttgtttgaagcacgtaacccatctaacccggctgtagtaaccgaaattgatggtgtg
gtaactttaggtggtattaaacgaggtaaccgcgaaatgaccattgaatcaaaagatggc
caggttaaaaaataccttgttccattgtcgaaacacatccttgtacaggataacgacttt
gtgaaagcaggtatgccgttatcagatggttcaatctctcctgcagatatcctggctatt
aaaggcccggctgctgtacaagagtacctggttaatggtatacaagaagtttaccgttta
cagggtgtgaagataaatgataaacactttgaggttattgttcaccagatgatgcagaaa
gtagctattgaagatgcgggcgatacccgtttcttagagcgcgaagctgttgatagctgg
gattttatgaccgagaacgatgagatatttgacaaaaaggttgtaactgagccaggcgac
tcaaatacgctgaaatctggccagatagtatcattgagaaggttacgtgatgaaaactcg
attttaaaacgtaaagatttaagattggttgaagtgcgcgatgctatcgctgcaacatca
agcccgatactgcaaggtatcaccagggcatcattaggtaccaaatcgtttatctctgca
gcatcgttccaggaaactaccaaagtactgaacgaagccgccatagcaggtaaaaaagac
ttaatgcttggtttgaaagaaaacgttattgttggtcacttaataccttctggtacaggt
ttacgcgaatacgaaaatatccgtgtaggctcacaagaagaatttgatcgcttaatggct
tcaaaagccgaggaagtagaagcataa
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