Mucilaginibacter celer: HYN43_013110
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Entry
HYN43_013110 CDS
T05668
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
muh
Mucilaginibacter celer
Pathway
muh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
muh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN43_013110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
muh03019
]
HYN43_013110
03400 DNA repair and recombination proteins [BR:
muh03400
]
HYN43_013110
Enzymes [BR:
muh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYN43_013110
Messenger RNA biogenesis [BR:
muh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYN43_013110
DNA repair and recombination proteins [BR:
muh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HYN43_013110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrD-helicase
AAA_19
UvrD_C
Helicase_C
UvrD_C_2
Viral_helicase1
ResIII
AAA_30
AAA_22
AAA_16
AAA_12
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AYL96174
UniProt:
A0A494VNC3
LinkDB
All DBs
Position
3298718..3303520
Genome browser
AA seq
1600 aa
AA seq
DB search
MNSIAFVDTEINPKNDRIMDIGAIKDNESAFHNPSEIEFGRFISGVQFICGHNILNHDIK
YIGRIIADVGINGLNIIDTLFLSPLLFPANPYHALLKDDKLQSDDLNNPLNDSKKAKELF
FDEVTAFKQTDGTLKQIYYLLLNQTREFGAFFRFIGYLCPDTGVRDLIRQKFKDQICSEA
GLMKAISNHPIELAYSLALINANHRYSITPPWVLMNYPKVEWIIYSLRNNPCITGCPYCL
QAMDAHRGLKRFFGFDEFRKYGDEPLQEKAVKAAINNKSLLAVFPTGGGKSITFQVPALM
AGENSKSLTVVISPLQSLMKDQVDNLEKIGITDAVTINGLLDPIEKAKSFERVENGSAAL
LYISPESLRSKTIERLLLGRKIARFVIDEAHCFSSWGQDFRVDYLYIGDFIKALQHKKSL
DYTIPVSCFTATAKQKVIEDIREYFRNKLSLELDLFTSKASRTNLQYQVFSKEGNDEKYQ
TVRDLIEQKNCPTIVYVSRTRNAENIADKLATDGFNARAFHGKMDAKLKTANQNAFIAGE
VQIMVATSAFGMGVDKKDVGLVIHYELSDSLENYVQEAGRAGRDENIEADCYALFNEEDL
SKHFIMHNQTKLSIKEIQQVWKAVKDITKFRSTVSNSALEIARKAGWDDNVAEIETRVKT
AISALEDAGYLKRGQNMPRVFANSILAKTAQEAIDKINLSTRFDDKQKQKAVRIIKKLFS
SKSKKQGNEETAESRVDYIGDHLGLMNGDVIAIINLLREEKILADTKDLTAFIKRTENKN
RSLAIVETFARIEKFLLPYFEQEEKTIQVKELNEAAANAGFDDVNPNKIKTIINFWSIKK
WIKRQSSDFSKSHFVVMANYPEAELQDKMNKRHELARFIVAFLYQRNISDPEKGKENSEE
TLIEFSVHELKTAYENSQTLFKVDVTIDDIEDTLFYLSRIEAIKIEGGFMVVYNRLTIER
LEQDNKIRYKVEDYQKLEQFYANKVQQIHIVGEYAKKMIADYKEALQFVEDYFQLNYSSF
LNKYFKGNRRDEINLTITATKFQQLFGELSHTQLAIIKDKDAKHVAVAAGPGSGKTRVLV
HKLASLFFMEDVKHEQLLMLTFSREAATEFKKRLIKLIGNAALRIEIKTFHSYCFDLLGK
IGSLEKSDQILKQAIKKIRNSEVEVNRITKTVLVIDEAQDMDSDEFDLVRALMEQNDEMR
VIAVGDDDQNIYEFRGASSKYLEEFITVNRAARHELIENYRSKSNLVSFSNQFVQTLRHR
LKQTPIAAKQTDDGKIKLVQYQHKNLIVPLVEDIVNTGLTGTTCVLVTTNDEALKITGLL
IKKGFKAKLIQSNDGFNLYDLLEVRYFISRLYLTDDVYTIDDEIWKNAKTDLVKNFQRSA
RLELCNKMLRDFEVINPKLKYKSDLVSFIRESKLEDFFDQNGETIFVSTIHKAKGKEFDN
VFMMLEDFNVSTDEKKRQLYVGMTRAKKNLTIHVNSNLFDGFSATNLERAENNDVHPEPN
QLTILLTHRDIWLDYFDSRQSFISQLLSGDKLIVSGDECLTTARQSVLKFSNGFLKQIEE
LKNKGYTLKSAKVNFIVYWQSERIAQEIKIILPALYFEKV
NT seq
4803 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgattgcttttgttgatactgagataaaccctaaaaacgatcgtataatggat
attggggctatcaaggacaatgaaagcgcttttcacaatccatccgaaattgagtttggc
cggtttattagcggggttcaatttatttgtggccataatattttaaaccacgatataaaa
tacatagggcggataatcgccgatgtagggataaatggattaaatattatcgatacttta
tttctctctcccctgttgtttccagccaacccttatcatgccttattaaaggatgataag
ttacaatccgacgatctcaacaatccgcttaatgattcgaaaaaagccaaagagctgttt
tttgatgaggttacggcattcaagcaaactgatggaacgttgaaacagatctattacctg
ttattaaaccaaacacgggagttcggcgcgtttttcaggtttataggatatttatgcccg
gacacaggtgtgagagaccttatccggcaaaaattcaaagatcagatttgctcggaagcg
ggcttaatgaaagcaatttcaaatcaccctatcgaactggcttattccctggcactcatc
aatgcaaaccacaggtattccattacccctccctgggtgttaatgaattacccaaaagtt
gagtggatcatctacagcctccgcaataatccctgcatcacgggctgcccgtattgcctg
caagcgatggatgcccatcgcgggttgaaaagatttttcggctttgatgagttcagaaaa
tacggggatgaacccttgcaggaaaaagcggttaaagcggccatcaacaataaatcgtta
ctggcagtgttccctaccggtggtggcaaatccattaccttccaggtaccggcactgatg
gccggcgaaaacagcaagagccttacggtagtgatctcgccgctgcaatcattgatgaaa
gatcaggttgataacctggagaagataggcattaccgatgcagttaccatcaacggcctg
cttgacccaattgaaaaagcaaaatcatttgaacgggttgagaacggatcggcggcactg
ttgtatatctcgcccgaatcattacggtctaaaactatcgaacgcctgcttttaggccgc
aagattgcccgttttgtgatcgacgaagcacactgcttttcctcatggggacaggatttc
agggttgattatttgtatatcggtgattttataaaggctttacagcacaaaaagagcctt
gattatactatcccggtatcctgcttcacggctacggccaaacaaaaggttattgaagat
atcagggagtatttcaggaacaaactttcgctggagctggacctattcacctccaaagcc
tcacgaaccaacctgcagtaccaggtttttagcaaggaaggtaacgacgaaaaataccag
accgttcgtgatcttatcgaacaaaaaaattgccctaccattgtatacgtttccagaacc
cgcaacgccgaaaacattgccgataagttagccaccgatggtttcaacgcccgcgccttt
cacggcaaaatggatgcgaagctgaaaaccgccaatcaaaacgctttcattgccggcgaa
gtgcagattatggtggccacatcggcctttgggatgggagtagataagaaggatgtgggt
ttggtgatccattacgaactttccgattcgttggagaattatgttcaggaggccggtcgc
gcggggcgggatgaaaacatagaggccgattgttacgcgctgtttaatgaggaagatttg
agtaagcattttataatgcataatcaaaccaaactttctattaaagagattcagcaggtt
tggaaagccgtaaaggatattacaaagtttagatcaaccgtttcaaattcagctttagaa
attgcccggaaggctggttgggacgacaacgttgccgaaattgaaacacgggtaaaaacc
gccatatccgcactcgaagatgccggttacctaaaacgcgggcaaaatatgccacgcgta
tttgccaatagtatcctcgcgaaaaccgcccaggaagccatcgataaaataaatctgtcg
accaggtttgacgacaagcaaaaacagaaggcggtgaggatcattaaaaagcttttctcg
agcaaaagcaaaaagcagggtaacgaagaaacagccgaatcgagagttgattacatcggc
gaccatttagggttgatgaacggggatgtaattgccattataaacctgctgcgggaagaa
aaaatcctggcagataccaaagacctaactgcgtttattaaacgtaccgaaaataaaaat
cgctcgctcgccatcgttgaaacgttcgccagaattgaaaaatttttactcccctatttt
gaacaggaggaaaaaacgattcaggttaaagaattaaatgaggctgccgcaaacgcgggc
tttgatgatgtaaatcccaataaaattaaaaccatcatcaatttttggtcgataaaaaaa
tggatcaaacgccaaagttccgacttttcgaaaagtcattttgtggtgatggcaaattac
cccgaagccgagctgcaagacaaaatgaacaagcggcatgaacttgcccggtttattgta
gcctttttgtatcaacgcaacatctctgatcccgaaaaaggtaaagaaaatagcgaagaa
acccttatcgaattttcggtacacgaactaaaaactgcttatgaaaacagccagacgtta
tttaaagtagacgtaacaatagatgatattgaagacacgctgttttacctatcccgaatt
gaggccataaaaattgagggtggctttatggtggtttataaccgcttaaccattgaacgc
ctggagcaggataacaagatccgttacaaagtggaagattatcaaaaactggagcagttt
tacgccaataaggttcagcagatacatattgtgggcgagtatgccaaaaagatgatcgct
gattataaagaggcgctgcaatttgttgaagattatttccagctcaattactcgtcattc
cttaacaaatattttaaaggcaaccgccgcgatgagattaacctcaccattaccgccacc
aaattccagcagctttttggtgaactttcgcacacccaattagccattattaaagataag
gacgccaaacatgtagcggtagcggcaggcccaggcagcggaaaaacaagggtgctggta
cataaactggcttcgttgttttttatggaagatgtaaagcacgagcaattgctaatgctc
acgttttcgcgggaggcggctacagagtttaaaaaaaggctgattaaactgattggcaac
gctgcgctgcgtatcgaaataaaaaccttccactcctattgctttgatttgctgggcaaa
attggcagtctggaaaaatcggaccagatacttaagcaagccatcaaaaaaatcaggaat
agtgaggttgaagtaaaccgcatcaccaaaaccgttttagtgattgacgaagcgcaggat
atggatagcgatgagtttgaccttgtacgcgccctgatggaacaaaacgatgaaatgagg
gtgatagccgttggcgacgatgatcagaacatttatgagtttagaggtgccagctccaaa
tatttagaggaatttattaccgtaaacagggccgcccggcacgagctgattgaaaattac
aggagtaaaagcaacctggtgagttttagtaaccagtttgtacaaacgttaaggcaccgg
ctaaagcaaacgccaattgcagctaaacaaaccgacgacggaaaaataaaattagttcaa
tatcagcataaaaacctcattgttccgctggtggaagatattgtgaataccggccttacc
ggcactacctgtgtattggtgactaccaatgatgaagctttaaaaattaccggcctgctt
ataaaaaaaggcttcaaggcaaagctgattcaaagtaacgatggctttaatttatatgat
ttgctggaagtaaggtattttataagccgtttatatcttaccgacgatgtttacaccatt
gacgatgagatttggaaaaacgccaaaactgacctggtaaagaattttcaacggagcgcg
aggctggagctttgcaataaaatgctaagggattttgaagtaattaaccctaaactaaaa
tataaatcagacctcgtatcctttatccgcgagtcgaaactggaagatttttttgatcaa
aacggcgaaaccatattcgtatcaaccatacataaagctaaaggaaaagagtttgacaat
gtgtttatgatgcttgaagatttcaacgtatcaacagatgagaaaaagcgccagctgtat
gtggggatgacacgggctaagaaaaaccttactatccatgtaaactcaaacctgtttgat
ggctttagtgccactaacctggaaagggctgaaaataacgatgttcatccagagcctaac
cagctaactatattactaactcaccgggatatctggcttgattattttgatagccgccaa
tcttttatttcacaacttttaagtggtgataaactgattgtaagcggcgatgaatgctta
actacagcaagacaatctgttttaaaattctctaatggctttttgaagcagattgaagaa
ttaaaaaacaaaggatacaccttaaaaagcgctaaggtaaacttcattgtttactggcaa
agcgagcggatagctcaggaaataaagatcattttaccggccctatattttgaaaaagtt
tag
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