Mucilaginibacter celer: HYN43_027000
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Entry
HYN43_027000 CDS
T05668
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
muh
Mucilaginibacter celer
Pathway
muh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
muh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN43_027000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
muh03019
]
HYN43_027000
03009 Ribosome biogenesis [BR:
muh03009
]
HYN43_027000
Enzymes [BR:
muh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HYN43_027000
Messenger RNA biogenesis [BR:
muh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYN43_027000
Ribosome biogenesis [BR:
muh03009
]
Prokaryotic type
rRNA helicases
HYN43_027000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF2278
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AYL98698
UniProt:
A0A494W557
LinkDB
All DBs
Position
complement(6472358..6474199)
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AA seq
613 aa
AA seq
DB search
MNNPFIELGIRHDIVNAISELGFENPTPIQEQSIPVLLTGSNDFVGLAQTGTGKTAAFGL
PLLELLDFEENHPQALVLCPTRELCLQIANDIKNYSKKMSNVHVVAVYGGASIMDQLRQI
KRGVQIVVATPGRMLDIINRKAIDFSAVKYVVLDEADEMLNMGFQEDIDSILSTTPEEKK
TWLFSATMPAEVRRIAKKYMTDPYELTMGAKNTGNANIEHEYYIVRARDKYAAFKRIVDF
NPDIFGIVFCRTKIETQEIAESLIKDGYNADSLHGDLSQQQRDKVMKRYRERSLQLLIAT
DVAARGIDVNDVTHVINYSLPDEVENYTHRSGRTARAGKTGVSISIVNAKELGKIRQIER
VIGKKFVKAEIPTGFDVCEKQLFSIVHKVHNVTVNEEQIEQYLPRIYDEFKDFTKEDFIK
RFASIEFNRFLDYYKNAPDLNANIEEGRNRFEDRGERGNGVRGNFTRLFINLGSVDEFNR
GDLLGYICNTTKISGRTVGKIDVKGVYSFFEVQNEDVDKVMSSFKEAEYKGRPVRIEISG
EGTSERREGGYRGGDRREGGYRGGDRREGGYRGGDRREGGYRGNERREHSNGGGFRDFSG
KRSEDRPERRRRF
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacccatttattgaactgggaatccgtcatgatattgttaatgccatctctgag
ttaggatttgaaaatcctacaccaatccaggagcagtcaatcccggtattgttaacaggc
agcaacgattttgtcggattagcccaaaccgggaccggaaaaactgctgcctttggcctg
ccacttttagaactgcttgatttcgaagaaaatcacccacaggcacttgttttatgcccc
acacgcgaactttgtttacaaatcgcgaacgacattaagaactactccaaaaaaatgagc
aacgtacacgttgttgctgtttatggcggagcaagtattatggatcaattgcgccagatt
aaacgcggcgtacagattgtagttgctacaccagggcgtatgcttgatatcattaaccgt
aaggctattgatttttcggctgtgaagtatgtagtattggacgaggctgatgaaatgctc
aacatgggctttcaggaagacattgatagtatcttatctaccacacccgaagagaaaaaa
acctggctattctcggccaccatgcctgcagaagttaggcggatcgctaaaaaatacatg
accgatccgtacgagcttactatgggcgcaaaaaacaccggcaatgccaatatcgagcat
gagtactatatagtacgtgcccgcgataagtatgccgcgtttaaacgtattgttgatttt
aaccctgatatttttggtatcgtattttgccgtaccaaaattgaaacccaggaaattgcc
gaatcgttgattaaagatggctacaatgccgattcattacacggcgacctttcgcagcaa
caacgcgataaagtaatgaaacgctaccgtgagcgcagcctgcaattgttaattgctact
gacgttgcagcccgtggtatcgacgttaacgacgtaacacacgttattaactattcattg
ccagatgaggttgaaaactacacccaccgtagcggtcgtacagcccgtgccggtaaaaca
ggtgtatctatctctatcgttaatgctaaagagttaggtaaaattcgccagattgagcgt
gttattggtaaaaaattcgttaaagctgaaatcccgaccggttttgatgtttgcgaaaaa
caactgttctctattgttcacaaagtacataacgtaactgtaaacgaagagcagattgaa
caatacctgccacgtatatacgacgagtttaaagatttcaccaaagaggatttcattaaa
cgctttgcatctatcgagtttaaccgctttttggattactataaaaacgcaccagaccta
aacgccaacattgaagaaggccgtaacaggtttgaagatcgtggcgagcgtggtaacggt
gtacgcggtaatttcacccgtctgttcatcaaccttggttcggtagatgagtttaaccgt
ggcgatttgttaggttacatctgtaacactactaaaatcagcggtcgtaccgtaggtaaa
atcgatgttaaaggtgtttattcattctttgaagttcagaacgaggatgttgataaagtg
atgagcagctttaaagaagccgaatacaaaggccgccctgtaaggatagaaatatccggc
gaaggcaccagcgaacgccgtgaaggaggttaccgtggtggcgacaggcgcgaaggcgga
taccgtggcggcgatcgtcgtgaaggcggttaccgtggtggcgaccgtcgtgaaggtgga
taccgtggcaacgaacgtcgcgaacatagcaatggcggcggtttccgcgatttctctggc
aaacgcagtgaagatcgtccggaacgtagaaggagattttaa
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