Mucilaginibacter celer: HYN43_028530
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Entry
HYN43_028530 CDS
T05668
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
muh
Mucilaginibacter celer
Pathway
muh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
muh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN43_028530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
muh03019
]
HYN43_028530
Enzymes [BR:
muh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HYN43_028530
Messenger RNA biogenesis [BR:
muh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYN43_028530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
Utp25_C
DsrH
Motif
Other DBs
NCBI-ProteinID:
AYL98975
UniProt:
A0A494W633
LinkDB
All DBs
Position
complement(6788781..6790148)
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AA seq
455 aa
AA seq
DB search
MSFENLNLIEPILKALKTEGYTTPTPIQAQAIPIILQRRDLLGCAQTGTGKTAAFAIPTL
QLLHQDRIAHKEQKTIKALVLTPTRELALQIGESFTNYGKHTGLKNLVIFGGVSQNPQVD
ALRRGVDILVATPGRLLDLMNQRYVHLDHVKFLILDEADRMLDMGFVNDVKKIIAKVPAK
RQTLFFSATMPKEIQGLADSILNNPEKVEVTPVSSTAETIQQAIYYVDKGDKKNLLIHIL
KDKTIKTVLVFTRTKHGADKVVKDLNRVGITAEAIHGNKSQNARQRALTNFKNRTTRVLI
ATDIAARGIDIDELTHVINYELPNVPETYVHRIGRTGRAGANGIAFSFCDAEELEFLKDI
HKLIAKQIPVEEGHPYPLSPAAMAAKINEAPKKGGSGGGQRGGGRGGNNRKSGGGGGNSR
SAGNGRSGGNKKSGGSRSEAGRPGGASGMSGSRRG
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgaaaatttaaatttaattgagcctatcctcaaggctttaaaaactgagggc
tatactacacctaccccaatccaggcgcaagccatacctattatattacagcgccgggat
ttgcttggctgtgcccaaaccggtaccggcaaaaccgcggcattcgctatccctaccctg
caacttctacaccaggacaggatagcccacaaagagcaaaaaaccattaaagcgttggtt
ttaaccccaacgcgcgaactggccctacaaattggcgaaagctttactaattacggcaaa
cacaccggccttaaaaatctggtaatttttggtggcgtatcgcaaaatccacaagttgat
gcattgcgccggggcgttgatatcctggttgcaacgccgggccgtttgcttgatttaatg
aaccagcgttatgttcacctggatcatgttaaattcctgatattggatgaggcagaccgc
atgctggatatgggctttgttaacgatgttaaaaagatcattgccaaagtaccggcaaaa
agacaaacgttgttcttttcggccaccatgccaaaagaaatccagggcctggccgatagc
atcctgaacaaccctgaaaaagtggaagttaccccggtatcatctactgccgaaaccata
cagcaagctatctattatgtggataaaggcgataaaaaaaacctgcttatccatatcctg
aaagataaaaccatcaaaaccgtactggtatttacccgcaccaaacacggtgccgataaa
gtggtgaaagatttgaaccgcgtaggcatcactgccgaagccattcacggcaataaatcg
caaaacgcaaggcaacgtgcgttaaccaactttaaaaaccgtactacccgcgtgttgata
gcaacagatattgccgcccgcggtattgatattgatgagttaacccacgttattaactac
gagctacctaacgtacccgaaacttatgtacaccgcataggccgtacaggccgtgccggg
gcaaatggtatagcattttcgttttgcgatgccgaagaactggagtttttgaaagatatc
cataagctgatagccaagcagatcccggtagaggaaggtcacccttacccgcttagtccg
gcggctatggctgccaaaataaacgaggcacctaaaaaaggtggttcgggcggtggtcag
cgtggtggtggtcgtggtggtaacaatcgcaagtctggcggcggcggtggcaatagccgc
tctgctggcaatggccgctctggtggcaacaaaaaatcaggcgggagccgttcagaggct
ggtcgcccgggtggtgcaagcgggatgagtggatcgagaaggggataa
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