Mucilaginibacter celer: HYN43_029805
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Entry
HYN43_029805 CDS
T05668
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
muh
Mucilaginibacter celer
Brite
KEGG Orthology (KO) [BR:
muh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
muh03009
]
HYN43_029805 (rlmD)
Enzymes [BR:
muh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HYN43_029805 (rlmD)
Ribosome biogenesis [BR:
muh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HYN43_029805 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
TRM5-TYW2_MTfase
Methyltransf_25
MTS
Methyltransf_15
PrmA
Motif
Other DBs
NCBI-ProteinID:
AYL99208
UniProt:
A0A494W6N7
LinkDB
All DBs
Position
complement(7092309..7093715)
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AA seq
468 aa
AA seq
DB search
MSKANKPKFFENVQIIDIAEEGKGVGKADDFVLFVDKAVPGDIADIQVYRSKKNFGEGKI
TELKTPSEYRTQAFCEHFGTCGGCKWQHMTYEAQLKFKQKSVSDALSRLAKINVDGMMPI
VPSPADRYYRNKLEFTFSNKRWLYDGENKEDGELNMNALGFHIPGRFDKILDVNHCYLQA
EPSNSLRNEIRDFTLQNGYTYYDLRNHEGMLRNLVVRTSSTGENMVIVVFAYAEQSEIDK
LMSHIDAKFPQITSLLYIVNHKKNDTIFDQDVVAFKGPEYIHEEMNGIKFRIGPKSFYQT
NSVQALRLYEITRDFADFKGDELVYDLYTGAGTIANFVAGHVREVVGVEYVPTAIEDAKV
NSAINNITNTKFYAGDMKDVLVADFVAEHGKPDVIITDPPRAGMHPDVVARLMEIEAPKI
VYVSCNAATQARDLLVLREKYDTVKIQPVDMFPHTQHVENVVLLVLRD
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagcgaataaacccaagttttttgagaacgtacagatcattgatattgcagaa
gaaggcaaaggtgtaggcaaagccgacgattttgtactttttgttgataaagccgttccc
ggcgatattgccgatatacaggtatatcgcagcaaaaaaaactttggcgaaggcaaaata
accgagctaaaaacaccttccgaataccgtacacaggctttctgcgaacacttcggcacc
tgcggcggctgcaaatggcagcacatgacgtatgaggcccagcttaaattcaaacaaaaa
tctgtttcggatgcgctaagccgtttagctaagatcaacgtggatggcatgatgcctatc
gtcccttctccggccgacaggtattaccgcaacaaactggagttcaccttctccaacaaa
cgctggctttacgatggcgaaaacaaagaggatggcgaactgaacatgaacgccctcggc
tttcacattccaggccgttttgataaaatattggatgtaaaccactgctacctgcaggcc
gaaccatctaatagtttacgtaacgagatccgtgatttcaccttacaaaacggttatacc
tattatgatctgcgtaaccacgaaggcatgctgcgcaaccttgtagtgcgtacctcatca
accggcgagaatatggtgatcgttgtttttgcttatgccgaacaaagcgagatcgataag
ctgatgagccacatcgatgccaaatttccgcagatcacttcattactttacatcgttaac
cataaaaaaaacgatactatatttgatcaggatgtggtggcttttaaaggccccgaatac
attcacgaagagatgaacggcatcaaattccgcatcggaccaaaatcgttctatcaaact
aactcagtacaggcattgcgtttgtacgagataacccgcgattttgccgattttaaaggc
gatgaactggtttatgatctttataccggtgccggtaccatagccaactttgtggccggc
cacgtgcgcgaggttgtgggtgtagaatatgtgccaaccgccattgaggatgccaaagta
aactcggccatcaacaatatcaccaataccaaattctacgcaggtgatatgaaggatgta
ctggtagccgatttcgtagcagaacacggaaaaccagacgtgatcattaccgatccacca
cgcgcaggcatgcacccggatgtggtagcccgcctaatggagattgaagcccctaaaatt
gtttacgtaagctgcaacgctgccacccaggcccgcgacctgctggtactaagggaaaaa
tacgacacggtaaaaattcaaccggtagatatgttcccgcacacccaacacgtggagaat
gtggtgttgcttgtgctcagagattag
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