KEGG   Mesitornis unicolor (brown roatelo): 104534221
Entry
104534221         CDS       T08455                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
mui  Mesitornis unicolor (brown roatelo)
Pathway
mui03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mui00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104534221 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mui03041]
    104534221 (SNRNP40)
Spliceosome [BR:mui03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    104534221 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    104534221 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_HPS5 Cytochrom_D1 WDR54 WD40_like WD_LRWD1 PROPPIN Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 104534221
NCBI-ProteinID: XP_010177127
LinkDB
Position
Unknown
AA seq 310 aa
GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGNTLASAGFDRLILLWNVYGDCDNYATLKG
HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV
CTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL
TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKN
LLRCSWSPDGSKIAGGSADRFVYVWDTTSRRILYKLPGHAGSVNELAFHPEEPIILSASS
DKRLYMGEIQ
NT seq 933 nt   +upstreamnt  +downstreamnt
ggcccgccgcgctgctcctccctgcaggcgcccatcatgctgctgtcggggcacgaaggg
gaggtgtactgctgcaagttccaccccaacggcaacaccctcgcctctgccggcttcgac
aggctcatcctgctgtggaacgtctacggggactgcgataactacgccaccctgaaggga
cacagcggggcggtcatggagctgcactataacacagatggcagcatgctgttctcagca
tccacagacaaaactgtggctgtgtgggacagtgagactggcgagagggtgaagaggctg
aagggccacacctcgttcgtgaactcctgttacccggcgaggcgaggaccccagctcgtc
tgtacaggcagcgatgatgggacagtgaagctctgggatatcaggaaaaaagctgctgtc
cagacatttcagaacacataccaggtcttggctgtaactttcaacgacaccagtgatcag
atcatatctggaggcatcgacaacgatattaaggtgtgggaccttcgccagaacaagctc
acttacacgatgcgaggacacgcagactcggtgacaggcctcagcctgagctcagaaggc
tcctacctgctctccaatgccatggacaacacagttcgcatctgggatgtgcgaccgttt
gcccctaaagagagatgtgtaaagattttccaggggaatgtgcataattttgaaaagaat
ctcttgaggtgctcttggtccccggatgggagtaaaatcgcagggggatcggccgatagg
tttgtctacgtgtgggacaccacgtccaggaggattttgtacaagctgccaggccacgct
gggtcggtgaatgaactggctttccatccggaggaacccatcattctctcggcgtccagc
gacaagaggctgtacatgggggagatccagtga

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