Mesitornis unicolor (brown roatelo): 104540236
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Entry
104540236 CDS
T08455
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mui
Mesitornis unicolor (brown roatelo)
Pathway
mui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104540236 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mui03019
]
104540236 (PARN)
Enzymes [BR:
mui01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104540236 (PARN)
Messenger RNA biogenesis [BR:
mui03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104540236 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
T6PP_C
Motif
Other DBs
NCBI-GeneID:
104540236
NCBI-ProteinID:
XP_010182288
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQGF
DFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYVSPNATKCPVTIPEDQKKFI
EKVVEQIEDLLKNEENESLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIVI
SKVNEEERKRREQQKQAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTIHQFY
CPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKVE
SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKSHVSARSKLIEPFFNK
LFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEDKQAKRKCTEDSWKEMERKRLKT
QCTPYVSQSRYYCVNSFTGSSTVGKRSMSPIQEETGSDYMEEEEGQDPEYGQTDSCAESF
PDGKKKAKKFKKIKTEQVPAGSLTTSSTGIFEVPETW
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggactttttgctctttcagtttggcctttgcacttttaaatatgatcacacagaagaa
aagtatataatgaagtcatttaatttctatatttttccaaaaccctttaacagaagttcc
ccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaaggattt
gattttaataaagtttttcgcaatggaattccatatttaaatcaggaagaagaaagacag
ctaagggaacagtatgatgaaaagcgttctcaggctaatggtgcaggatctctgtcatac
gtttctcctaatgccacaaaatgtcctgtaacaattcctgaagatcagaaaaaatttatt
gagaaagtagtggaacagatagaagacttactaaagaatgaagaaaatgaaagtttggat
ttggagccatgtacaggatttcagaggaaattaatttatcagaccttgagctggaaatat
ccaaaaggtatccatgttgaaaccctggagtcagataagaaggagagatacattgttatt
agtaaggtaaatgaagaagaacgaaaaagaagagaacagcagaaacaagcaaaagaacag
gaagaattgaatgatgcagtaggattttccagagtcattcatgccattgctaattctggc
aagcttgtaattgggcacaatatgctgctggatgttatgcataccatacatcagttttat
tgtccactacctgatgacctgagtgagttcaaggaagtgacatcttgtgtctttccacgg
ctattggatactaaactgatggcaagtacacaaccttttaaggagatcattaataataca
tcccttgcagaactggaaaagcgattaaaagaggttccattcagccctcctaaagttgaa
agtgcagaagggtttccaagttacgatacagcttctgaacaacttcacgaagcaggatat
gatgcttacattactggactgtgcttcatctccatggctaatttcctgggttcattcctc
agtcctccgaaaagccatgtgtcggctagatcaaaactcattgaacctttttttaacaag
ctatttcttatgagagtaatggacataccatatctcaatttggaaggaccagacttgcag
cccaaacgagatcacgttcttcatgttacttttcccaaggagtggaagacgagtgacctt
taccagcttttcagtgcctttggtaacattcaggtttcatggattgatgatacatcagca
tttgtatcgctgagccagccagaacaagtacaaatagctgtaaacaccagcaggtatgct
gaaagttataggatccagacatatgcagaatatgttgagaaaaaacatgaagacaagcag
gcaaagagaaaatgtacagaagatagttggaaggagatggagagaaagcggttaaaaact
caatgcacaccttacgtttcccagagtcgatactactgtgttaacagttttacgggtagc
agtacagtgggaaagagaagcatgagtcccattcaggaagaaactggttctgattatatg
gaagaagaagaaggccaagatccagaatacggtcagacagattcctgtgcagagtccttt
ccagatggtaagaagaaagccaaaaagttcaaaaagatcaagacagaacaagttccagca
ggaagcctcacaaccagttccactggaatttttgaagtccctgaaacatggtag
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