Pseudoduganella umbonata: FCL38_00185
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Entry
FCL38_00185 CDS
T06138
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mum
Pseudoduganella umbonata
Pathway
mum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
FCL38_00185
09124 Replication and repair
03420 Nucleotide excision repair
FCL38_00185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mum03021
]
FCL38_00185
03036 Chromosome and associated proteins [BR:
mum03036
]
FCL38_00185
03400 DNA repair and recombination proteins [BR:
mum03400
]
FCL38_00185
Enzymes [BR:
mum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
FCL38_00185
Transcription machinery [BR:
mum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
FCL38_00185
Chromosome and associated proteins [BR:
mum03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
FCL38_00185
DNA repair and recombination proteins [BR:
mum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
FCL38_00185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
QCP14400
LinkDB
All DBs
Position
complement(36909..39182)
Genome browser
AA seq
757 aa
AA seq
DB search
MATKYTVAVRALCEFTAKAGDLDLRFTPSPTAQEGIAGHGVVTSRRDDDYEREIALSGEF
GPLHVRGRADGYDPKRNQLEEIKTFRGELERMPGNHRALHWAQVKVYGHLLCAARALPSL
RLALVYYDIGSQKETHLVEEHSAAALQAYFEAQCGLFLAWAEAELAHRAARDEQLQALRF
PHADFRPGQRELAEAMYKASARSCALLAQAPTGIGKSVGSLFPLLKAAAAHGHDKIFFLA
AKTSGRRMALDAVENIRASAPLLPLRTLELAARSTACEHPDKACHGESCPLAKGFYDRLP
AARAAAVRQPMLDRAGVREVALAHGVCPYYLQSELVRWADVVVGDYNYYFDVTAMLHSLT
VMNDWRIAVLADEAHNMVSRARKMYSAELEHAGLRLLRKTAPAALKKALDRVHRQWSALE
KEQQDDYHAYDALPEKLVNALQTAATDIGDYMAENPAWFDADILDFYFSVLHFTRLAESF
GDHSVFDVTIANRGAGGGTRADSVLCLRNIVPAPFLQPRFAAARTTALFSATLSPWNYYS
DTLGMPAGTAWVDVASPFQAAQLTVHIAGHISTRYQHRDRSLAPIAALMGEQYQRQPGNY
LAFFSSFDYLDKAAALFEREHPHVTVWRQPRRMGEAERDAFLARFTETGQGIGFAVLGGA
FGEGIDLPGARLIGAFIATLGLPQLNPVNERIRERMQAIFGAGYDYTYLYPGLQKVVQAA
GRVIRTTSDTGTVHLIDDRFARPDIRALLPAWWHVPG
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaagtacacggtggctgtgcgggcgctgtgcgaattcaccgccaaggccggc
gacctggacctgcgcttcacgccctcgcccaccgcgcaggaaggcattgccggccacggc
gtggtcacctcccggcgcgacgacgattacgagcgcgagatcgcgctgtccggcgaattc
ggtccgctgcacgtgcgcggccgcgccgacggctacgacccgaagcgcaaccagctcgag
gaaatcaagactttcaggggcgagctggagcgcatgcccggcaaccatcgggcgctgcac
tgggcgcaggtcaaggtgtacggacacctgctgtgcgcggcgcgcgcgctgccgtcgctg
cggctggcgctggtctactacgatatcggctcgcagaaggaaacccacctcgtcgaggag
cacagcgccgcggcgctgcaggcgtatttcgaggcgcagtgcggcctgttcctggcctgg
gccgaagccgaactggcgcaccgcgccgcgcgcgacgagcaactgcaggcgctgcgcttt
ccgcatgccgatttccggcccggccagcgcgaactggccgaagcgatgtacaaggccagc
gcccgttcgtgcgcgctgctggcgcaggcgccgaccggcatcggcaagagcgtgggcagc
ctgttcccgctgctgaaggcggccgcggcgcatggccacgacaagatcttcttcctggct
gcgaaaacgtccggccggcgcatggcactcgatgccgtggaaaacatccgggccagcgcc
ccgctgctgccgctgcgcacgctggaactggcggcccgcagcacggcctgcgaacatccg
gacaaggcctgccatggcgaatcctgcccgctggcgaaagggttttatgaccgcttgccg
gcggcccgcgccgcggcggtgcggcagccgatgctcgatcgcgccggcgtgcgcgaggtg
gcgctggcgcatggtgtgtgcccgtactacctgcaaagcgaactggtacgctgggccgac
gtggtcgtcggcgactacaactattatttcgacgtgacggcgatgctgcattcgctgacc
gtgatgaacgactggcgcatcgcggtattggccgacgaggcgcacaacatggtgtcgcgc
gcccgcaagatgtattcggcggagctggaacacgccggcctgcggctgctgcgcaagacc
gccccggcggccttgaagaaggcgctggaccgcgtgcaccggcaatggtcggcgctcgaa
aaagagcagcaggacgactaccatgcctacgacgcgctgccggaaaaactcgtcaacgca
ttgcagaccgccgccaccgacatcggcgactacatggcggaaaatcctgcctggttcgat
gccgacatcctcgacttttatttctccgtgctgcatttcacgcgcctggccgagagcttc
ggcgatcactctgtcttcgatgtcacgatcgcgaaccggggcgccggcggcggcacgcgt
gccgattccgtgctatgcctgcgcaacatcgtgccggcgccgttcctgcaaccgcgcttc
gccgcggcgcgcacgacggcgctgttctcggccacgctcagcccctggaactattacagc
gacacgctgggcatgccggccggcaccgcgtgggtcgacgtggcctcgccgttccaggcc
gcgcagctgacggtgcacatcgccggccacatctcgacccgctaccagcaccgcgaccgc
tcgctggcaccgatcgccgcgctgatgggcgagcagtaccagcgccagcccggcaactac
ctggccttcttcagcagcttcgactacctggacaaggccgcagcgctgttcgagcgcgag
cacccgcacgtgaccgtatggcgccagccgcggcggatgggcgaagccgagcgcgacgcc
ttcctggcacgcttcaccgaaaccggccagggcatcggctttgccgtgctgggtggtgcc
ttcggcgagggcatcgacctgcccggcgcgcggctgatcggagccttcatcgccacgctg
ggactaccgcagctgaatcccgtcaacgagcggatccgcgaacggatgcaggcgatcttc
ggcgccggctacgattacacctacctgtacccgggcctgcagaaggtggtgcaggccgcc
ggccgcgtgatccgcaccaccagcgacaccggcaccgtgcacctgatcgacgaccgcttc
gcccggcccgacatccgcgccctgctgccggcgtggtggcatgtgccgggatga
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