Pseudoduganella umbonata: FCL38_01440
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Entry
FCL38_01440 CDS
T06138
Name
(GenBank) hypothetical protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mum
Pseudoduganella umbonata
Pathway
mum00040
Pentose and glucuronate interconversions
mum01100
Metabolic pathways
mum02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
FCL38_01440
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
FCL38_01440
Enzymes [BR:
mum01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
FCL38_01440
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pectinesterase
Big_5
Big_2
3keto-disac_hyd
Mala_s_1-like
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
QCP09248
LinkDB
All DBs
Position
343824..347375
Genome browser
AA seq
1183 aa
AA seq
DB search
MRFPAFKAALCAAFLLGAVPGHGADPVDPARQAAPLDGWASQGGGTRGGSAAPAEQIYTV
NNRAQLLAAIHNGGTSAKIIKLAGTIDMTEGQPFASSADQAARGAIRLKSNTTLIGGAAN
AGIVNGHIVLSNVSQVIIRNLKLVNPCDVGPVWDPTDGATGNWNSAFDAIGISGSDHVWV
DHVSFTDAPVTDDLLPVENDHVKQCHDGALDITNGSDYVTVSYNLFEQHNKNNLVGGSDS
ATGDEGKLRVTFSNNVFRDVASRAPRVRFGQVHLFNNYYAGAKAHPVYPVSYAVGVGTAA
KILSHNNVFDVAGAGACSAVVRDFSGAIAGAFQDTGSRLNGAALGACGVPASAGWTPPYA
FSVRPVALVKANALAQSGGGKLTTTVTGTGSTTIDTGPSLACPATGLYFCDDFQGGNAAK
WDLLPVAGPNGSFRVQDEVAGSANKVLQYTAASTGGVLALIKPAGLDKVPSGDYFVEARI
RPMTNGTTGNKHLYLVTRYVDAGNWYGGGLNVQSSTSSTQVEIAKMFAGALSRPKQVRKP
VAMDGPFYTVRFEMIGSTLTVYLDGENLGSVTDSAFAARGLVGLYTANKSFQIDDVRIGD
PALKPAQMTLAPAVTTYAAEAGDVPLQVTVNARAPDGTADSYTAVSSNPAVATVSVDGNV
ATITPVGGGTAKIVFTSGSDPLLVRTIDATIAPQFVQPAQTYTLDNAAYPAALADAEPVD
VSLKLVFDRPPVLGSGGSIRVFRKADDALVDVVRLTGETDVIGHAGQSQVRKVNTTPIRI
DGNAATIRLHGNKLEYGTEYYVAISDGVFTGTALGGVPFAGIGRLGNWSFTTAAAAPAGD
TVTVDDDGAADFRTVQGALNHAMQYFDKAAPVTIRVKNGTYEELLYLRGKDNVSITGESR
DGVVIRYTNNDSLNSGTGASQGAGTSGVRGGRAIMLVEAVDMLTLESLTFNNTTLRSPAI
SAQAETLYFNSDGGRLVAKDAAFLSEQDTLNLKGWSWFYRTLVAGNVDFIWGSSRAALFE
QSEIRSVGDTTSATSGGYVLQARVPTAFDKGFVFLDSTLTHGPGPGPLHGDVPAGATYLA
RSPGGTSSWDNIAFINCRMDRHVAAVGWAGLGVNNQPAPNPVQPDAASGWREYGTTDLAG
TPLDLAARVGGFQLSASDVEAGFSSRAKVFAGFGNGAGWDPQP
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttccagcattcaaggcggcgctgtgcgccgcattcctgctcggcgcggtgccg
ggccacggcgccgatccggtcgatccggcgcgccaggctgcgccactcgacgggtgggcc
agccagggcggcggcacgcggggcggttcggccgcgccggcagagcagatctacaccgtg
aacaaccgcgcgcagctgctggcggcaatccacaacggcggcaccagcgcgaagatcatc
aagctggccggcaccatcgacatgaccgaaggccagccgttcgccagcagcgccgaccag
gccgcgcggggcgccatccgcctgaaaagcaatacgacactgatcggcggcgcggccaat
gccggcatcgtcaacggccacatcgtgctgtcgaacgtctcgcaggtcatcatccgcaac
ctgaagctggtcaatccgtgcgacgttgggcccgtctgggatcccaccgacggcgccacc
ggcaactggaattcggccttcgacgcgatcggcatctccgggtcggatcacgtgtgggtc
gatcacgtcagcttcaccgatgcgccggtcacggacgacctgctgccggtcgagaacgac
catgtgaagcaatgccacgacggcgcgctcgacatcaccaacggttccgactacgtgacg
gtgtcgtacaacctgttcgagcagcacaacaagaacaacctggtcggcggcagcgacagc
gccaccggcgacgaaggcaagctgcgcgtcaccttcagcaacaacgtgttccgcgacgtg
gccagccgtgcgccgcgggtgcgcttcggccaggtccacctgttcaacaattactatgcc
ggcgcgaaggcgcaccccgtgtacccggtgagctacgccgtcggcgtgggcaccgcggcg
aagatcctgtcgcacaacaacgtgttcgacgtcgccggggccggcgcctgttccgccgtg
gtcagggacttttccggcgccatcgcaggcgcgttccaggacaccggctcgcggctgaac
ggcgcggccctcggtgcctgcggcgtgcccgccagcgccggctggaccccgccgtacgca
ttcagcgttcgcccggtggcgctggtgaaggccaacgcgctggcgcagtccggcggcggc
aagctgacgaccaccgtgaccggcaccggcagcacgacgatcgacaccggtccgagcctg
gcctgcccggcgaccggcctgtatttctgcgacgatttccagggcggcaatgcggcgaaa
tgggacctgctgccggtcgccggcccgaacggcagcttccgcgtgcaggatgaagtggcc
ggcagcgcgaacaaggtgctgcagtacacggccgcgtcgaccggcggcgtgctggcgctg
atcaagccggccgggctggacaaggtgccgtcgggcgattacttcgtcgaggcgcgcatc
cgcccgatgaccaacggcaccacgggcaacaagcacctgtacctggtgacgcgctatgtc
gatgccggcaactggtacggcggcggcctgaacgtgcagagcagcacctccagcacgcag
gtcgagatcgcgaagatgttcgccggcgcgctgagccggccgaagcaggtgcgcaagccg
gtcgcaatggatggcccgttctacacggtgcgtttcgagatgatcggcagcacgctgacg
gtgtacctcgatggcgagaacctgggctcggtgaccgacagcgccttcgccgcgcgcggc
ctggtgggcctgtacacggccaacaaatcgttccagatcgacgacgtgcggatcggcgac
ccggccctgaaacccgcgcagatgacgctcgcccccgccgtgacgacctatgccgcggag
gcgggcgacgtgccgctgcaggtgaccgtgaatgcccgcgcccccgacggcacggcggac
agctacacggcggtgtcgagcaacccggcggtggcaaccgtcagcgtggacggcaacgtc
gccacgatcacgccggtcggcggcggcacggcgaagatcgtcttcacgtccggctcggat
ccgctgctggtgcgcacgatcgacgccaccattgccccgcaattcgtgcagccggcgcag
acctacacgctcgacaatgccgcatacccggccgcgctggccgatgccgagccggtcgac
gtgtcgttgaaactcgtgttcgacaggccgccggtactgggcagcggcggcagcatccgc
gtgttccgcaaggccgacgatgcgctggtcgacgtggtacggctcaccggcgaaaccgat
gtgatcggccatgccgggcagtcgcaggtgcgcaaggtgaacacgacgccgatccggatc
gacggcaatgcggcgaccatccggctgcacggcaacaagctcgaatacggtaccgaatac
tacgtcgcgatatcggacggcgtattcaccggcaccgcgctgggcggcgttccgttcgcc
ggcatcggcaggctgggcaactggtcgttcactaccgctgccgcggcgccggcgggcgac
acggtcacggtcgacgacgatggcgcggcggatttccgtacggtccagggcgcgctcaac
cacgcgatgcagtacttcgacaaggccgcgccggtgaccatccgcgtgaagaacggcacg
tacgaagagctgctgtacctgcgtggcaaggacaatgtcagcatcaccggcgagagccgc
gacggcgtcgtgatccgctataccaacaacgactcgctgaattcgggcaccggcgccagc
cagggggcgggcaccagcggggtacgcggcggccgcgcgatcatgctggtcgaagcggtc
gacatgctcaccctggaatcgctcaccttcaacaacacgacactgcgctcgccggccatt
tcggcgcaggccgaaacgctgtacttcaacagcgacggcgggcggctggtggcgaaggac
gcggccttcctcagcgagcaggacacgctgaacctgaagggctggtcgtggttctaccgc
acgctggtggccggcaatgtcgacttcatctggggcagcagccgcgcggcgctgttcgag
caaagcgagatccgctcggtgggcgacaccaccagcgcgaccagcggcggctacgtgctg
caggcgcgggtgccgactgccttcgacaagggctttgttttcctcgacagcacgctgacg
catggtcccggccctgggccgctgcatggcgacgtgccggccggcgccacctacctggcg
cgcagcccgggcggcacgtcgagctgggacaacatcgccttcatcaactgccggatggac
cggcacgttgccgcggtgggctgggccggccttggggtgaacaaccagccggcgccgaac
ccggtccagccggacgccgcctccggctggcgcgagtacggcaccaccgacctggccggc
acgccgctcgacctggccgcccgcgtgggcggattccagctcagcgccagcgatgtggag
gcaggcttctcatcgcgcgcgaaggtgtttgccgggttcggcaacggagcagggtgggat
ccgcagccttga
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