Pseudoduganella umbonata: FCL38_02280
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Entry
FCL38_02280 CDS
T06138
Name
(GenBank) ribonuclease Z
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
mum
Pseudoduganella umbonata
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mum03016
]
FCL38_02280
Enzymes [BR:
mum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
FCL38_02280
Transfer RNA biogenesis [BR:
mum03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
FCL38_02280
Prokaryotic type
FCL38_02280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Lactamase_B_4
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QCP09379
LinkDB
All DBs
Position
555832..556809
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AA seq
325 aa
AA seq
DB search
MELQFLGTSSGTPTRTRNVAGLALRTAGGWVLVDCGEGTQHRILRTNHSPHDLRAIFITH
LHGDHCYGLPGLLASAGLLNRTAPLAIVGPAPLERYVRGVMETTALQLPYPVEFIDVEDA
ARDGLLSDLAVSATPLSHRIPSYAYGFTEKAVERRLDADRLAAAGVPRGPLWGALQAGNE
VTLPDGRAIRPADVLQPPRRPRRIVIAGDNDTPALLADAVRDAHVLVHEATYTEAILAKV
GPGPQHSSALRVARFAREAAIPNLVLTHFSPRYQDTAGPLTLADIEAEARTEYTGNLFLA
RDLARHALDREGMLSESPRSQAPGA
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atggaactgcaatttctcggcacctcctcgggcacccccaccagaacacgcaacgtggcc
ggcctggctttgcgcacggccggcgggtgggtgctggtcgattgcggcgagggcacgcag
caccgcatcctgcgcaccaaccattcgccgcacgacctgcgcgccatcttcatcacccac
ctgcacggcgaccattgctatggcttgccgggattgctggccagcgcgggcctgctgaac
cgcacggcgccgctggccatcgtcggacccgcaccgctggagcgctacgtgcgcggcgtg
atggagaccacggcattgcagctgccgtatccggtcgagttcatcgacgtggaagacgcc
gcccgggatggcctgctgtccgacttggccgtctccgccaccccgctgtcgcaccgcatc
ccgtcgtacgcctacggcttcaccgagaaagccgtcgaacgccggctcgatgcggaccgg
ctggcggcggccggcgtgccgcgcggcccgctgtggggggcgctgcaggccggcaacgag
gtgacgctgcccgatggccgcgcgatacgtccggccgacgtgctgcagccgccgcgccgc
ccgcgccgcatcgtcatcgccggcgacaacgatacgccggcgctgctggccgacgcggtg
cgcgatgcccacgtgctggtgcacgaagccacgtacacggaggcgatcctggcgaaggtc
ggtcccggcccgcagcacagttccgcgctgcgggtggcgcgctttgcccgcgaggcggcc
atcccgaacctggtactgacccatttcagcccccgctaccaggatacggccgggccgctg
acgctggccgacatcgaagccgaggcccgcaccgagtacacgggaaacctattcctggca
cgcgacctggcccgccatgcgctggaccgggaaggaatgttgtcggaatcgccgcgcagc
caggctcctggtgcataa
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