Pseudoduganella umbonata: FCL38_06275
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Entry
FCL38_06275 CDS
T06138
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mum
Pseudoduganella umbonata
Pathway
mum03410
Base excision repair
mum03430
Mismatch repair
mum03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FCL38_06275 (recJ)
03430 Mismatch repair
FCL38_06275 (recJ)
03440 Homologous recombination
FCL38_06275 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mum03400
]
FCL38_06275 (recJ)
DNA repair and recombination proteins [BR:
mum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FCL38_06275 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FCL38_06275 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FCL38_06275 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QCP10076
UniProt:
A0A4P8HM70
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All DBs
Position
1521640..1523334
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AA seq
564 aa
AA seq
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MTRITHRPCPFRESEMLRQGGIHPVLARLFAARGLTDPKDLSSELSALILPSGLLHIDAA
AVFLADAIAAGKRMVIVADYDCDGATACAVALRGLRAMGANVDFIVPNRFEYGYGLTPEI
VALTAREKAPDIILTVDNGIASIDGVEEAKRRGIEVIVTDHHLPGDRLPDARVIVNPNQP
ACGFPSKNLAGVGVVFYVLLALRAELRRRGVFDAQTQPKLDSLLDLVALGTVADVVKLDT
NNRILVAQGLKRMRAGRMHAGVAALFRVAGRQARCATPFDLGFALGPRLNAAGRLQDMSL
GIECLITDDEGRAWALAQQLNEINLKRREIEAEMQDTALLHLDDFQPSQSSTICVFDDSW
HQGVIGIVASRLKEKFYRPTITFAPAGDGWIKGSGRSIAGFHLRDALDLVSKRAPSLIDK
FGGHAMAAGLSIRADAFDAFATAFETVGQSWLTEQQLERIIETDGPLEDAYFTTQFIELM
DGIVWGQGFAPPVFCDEFRVISQRILKERHLKLLLERNGARYDAIWFGRTDALGDRARVA
FRLDANEYNGTTRVQLMVEHAEPA
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgacccgtatcacccaccgtccctgcccgttccgcgaatcggaaatgttgcgccagggg
ggcatccatccggtgctggcgcgcctgtttgccgcgcgcggcctgaccgatccgaaggac
ctgtcatccgaactgtcggcgctgatcctgccttcgggtctgctgcacatcgatgccgcc
gccgttttcctggccgatgcgattgccgcgggcaagcgcatggtcatcgtggccgactac
gattgtgacggcgccactgcctgcgccgtcgcgctgcgcggcctgcgtgcaatgggcgcg
aacgtcgacttcatcgtgccgaaccgcttcgagtacggctatggcctgacgccggagatc
gtggcgctgacggcgcgcgagaaagcacccgacatcatcctgaccgtcgacaacggcatc
gccagcatcgacggtgtggaagaagcaaagcggcgcggcatcgaggtgatcgtcaccgac
catcacctgccgggcgaccggctgcccgatgcacgcgtgatcgtcaatccgaaccagccg
gcctgcggtttcccatcgaagaacctggcgggagtcggggtcgtgttctacgtactgctg
gccttgcgtgccgaactgcgccgccgtggcgtattcgatgcgcaaacccagccgaaactc
gattcgctgctcgacctggttgcgctgggtaccgtggcggacgtggtcaaactggacacg
aacaaccgtatcctcgtggcgcagggcctgaagcggatgcgcgccggccgcatgcatgcc
ggtgtcgccgcgctgtttcgcgtggctggccgccaggcgcgctgcgccacgccgttcgac
ctgggcttcgcgctggggccgcggctgaacgcggcgggccgcctgcaagacatgtcgctc
ggcatcgaatgcctgatcaccgacgatgaaggccgcgcctgggcgctggcccagcagctc
aacgagatcaacctgaagcggcgcgaaatcgaggccgagatgcaggacacggcgctgctg
cacctggacgatttccagccctcgcaaagttcgacgatctgcgtgttcgacgattcgtgg
caccagggcgtgatcggcatcgttgcctcgcggctgaaggaaaaattctaccggcccacg
atcacgttcgcaccggccggcgatggctggatcaaaggatccggccgctcgattgccggc
ttccacctgcgcgatgcgcttgacctggtgtcgaagcgggcacccagcctgatcgacaaa
ttcggcggccacgcgatggccgccggcctgtcgatccgtgccgacgcattcgacgcgttt
gccacggcgttcgagacggtcggccagtcctggctgacggagcagcagctggaaaggatc
atcgagacggatgggccgctggaagatgcctatttcaccacgcagttcattgaactgatg
gatggcatcgtatggggccaggggttcgcaccgcctgtattctgtgacgaattccgcgtg
atcagccagcgcatcctgaaggaacgccacctgaaacttctgctggagcgcaatggcgcc
cgctacgacgcgatctggttcggccgcacggatgcccttggcgaccgcgcccgggttgca
ttccggctcgacgccaacgaatacaacggcaccacccgcgtgcagttgatggtggagcac
gccgagccggcgtag
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