Pseudoduganella umbonata: FCL38_11275
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Entry
FCL38_11275 CDS
T06138
Symbol
sbcD
Name
(GenBank) exonuclease subunit SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
mum
Pseudoduganella umbonata
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mum03400
]
FCL38_11275 (sbcD)
DNA repair and recombination proteins [BR:
mum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FCL38_11275 (sbcD)
Archaeal homologous recombinant proteins
FCL38_11275 (sbcD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
DHBP_synthase
Motif
Other DBs
NCBI-ProteinID:
QCP10935
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Position
2786257..2787486
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AA seq
409 aa
AA seq
DB search
MRLLHTSDWHLGQSLHNFDRHYEHQCFLDWLLETIVAEQADALLIAGDVFDNANPSAASQ
RQLYRFLRQARAAAPGLDIMLVAGNHDSPGRIDAPGPLLEELGTRVVGNVERDADGAVDV
ARMVHPLTNRDGAVAAWCLAVPFLRPSDVPRVEGGGDAYLAGIAELYRLALAHAETLRQP
GQAIVAMGHCHMVDGQMSADSERRIVIGGTEMLPAGIFGPSIAYAALGHLHLAQQIGRHA
HIRYCGSPLPLSFSEVHYQHQVLRIDLDGDALRETVPVPVPRAVHLLRVPTRPAPLEQVL
DELEALDFPLAPAYAQPYLEVRVRLDAPEPGLRARIEAALEGKHVRLAKIETSSGRRGSL
DEAAVSLDQLAQLQPADVFSRLYRQKFGNDAPDDQMAAFAELLLAEPAR
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgctgcacacctccgactggcacctgggccagtcactccacaatttcgaccgg
cattacgaacaccagtgcttcctcgactggctgctggaaaccatcgttgccgaacaggcg
gacgcgctgctgatcgccggcgacgtgttcgacaacgccaacccttccgccgcgtcgcag
cgccagctgtaccgcttcctgcggcaggccagggccgcggcgcccggcctcgacatcatg
ctggtggccggcaaccacgattcgccgggccgcatcgacgcccccggcccgctgctcgag
gaactgggcacgcgcgtggtcggcaatgtcgagcgcgacgcggacggcgcggtcgacgtg
gcgcgcatggtgcatccgctgaccaaccgcgacggcgcggtggccgcgtggtgcctggcg
gtaccgttcctgcggccgtccgacgtgccgcgcgtggaaggcggcggcgacgcctacctg
gccggcatcgccgaactgtaccggctggcgctggcccatgccgaaacgctgcgccagccc
ggccaggccatcgtggcgatgggccactgccacatggtcgatggccagatgtcggccgac
tcggaacgccgcatcgtcatcggcggcaccgagatgctgccggccgggatcttcggcccg
tcgatcgcgtacgcggcgctgggtcacctgcacctggcccagcagatcggccgccatgcc
cacatccgctattgcggcagcccgctgccgctgtcgttctcggaagtgcactaccagcac
caggtgctgcgcatcgacctggacggcgatgcgttgcgcgagaccgtgccggtgccggtg
ccgcgcgccgtgcacctgctgcgcgtgccgaccaggcccgcgccgctcgaacaggtgctc
gacgaactggaagcgctcgacttcccgctggccccggcctatgcccagccctacctggaa
gtgcgggtgcgcctcgatgcccccgagcccggcctgcgcgcccgcatcgaggcggcgctg
gaaggcaagcatgtgcggctggcgaagatcgagaccagcagcgggcggcgcggctcgctc
gacgaggcggcggtgtcgctggaccagctggcgcaactgcagccggccgacgtgttctcg
cggctgtaccggcaaaaattcggcaatgacgcgccggacgaccagatggccgcctttgcc
gagctgctgctggcggagccggcacgatga
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