Pseudoduganella umbonata: FCL38_12325
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Entry
FCL38_12325 CDS
T06138
Name
(GenBank) RNA-binding protein
KO
K06182
23S rRNA pseudouridine2604 synthase [EC:
5.4.99.21
]
Organism
mum
Pseudoduganella umbonata
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mum03009
]
FCL38_12325
Enzymes [BR:
mum01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.21 23S rRNA pseudouridine2604 synthase
FCL38_12325
Ribosome biogenesis [BR:
mum03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FCL38_12325
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S4
PseudoU_synth_2
Anthrone_oxy
Motif
Other DBs
NCBI-ProteinID:
QCP11108
UniProt:
A0A4P8HR75
LinkDB
All DBs
Position
complement(3020823..3021500)
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AA seq
225 aa
AA seq
DB search
MSDESIRLSKRVMDEKGCSRREAELYIEGGFVLVDGTVVEEPGARVAPSQAVALAADATL
LDIVPVTILLNKPAGADALRCLVPEARSEHAAKERFLKRHLHNLTPVLPLDLSASGLFVF
TQDYRVIRKLVDEPGSVEQELIVDVDGSIVDNGLAQLNQGATKVSWQNERRLRFAVKGPK
PSQIERMCGAVGLTPTAIRRLRIGRLSMGSLPVGQWRYLLGYERF
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgagtcgatccgcctgtcgaagcgggtgatggacgagaagggctgctcgcgg
cgcgaagcggaactgtacatcgaaggcggcttcgtgctcgtcgacggaactgtcgtcgaa
gaaccgggtgcccgcgtggcaccgtcgcaggcggtggcgctggctgcggacgccacgctg
ctggacatcgtgccggtcacgatcctgctgaacaagccggccggcgccgatgcgctgcgc
tgcctggtgccggaggcgcgcagcgagcacgctgcgaaagaacgcttcctgaagcggcac
ctgcacaacctgacgccggtgctgccgctcgacctctcggccagcggcttgttcgtgttc
acgcaggactaccgcgtgatccgcaagctggtggatgagccgggttcggtggagcaggag
ctgatcgtcgatgtcgacggcagcatcgtcgacaacggcctggcccagctgaaccagggc
gccacgaaggtcagctggcagaacgagcggcggctgcgcttcgccgtcaagggcccgaag
ccgagccagatcgagcggatgtgcggcgccgtcgggctgacgcccaccgccatccggcgg
ctgcgcatcggccgcctctcgatgggcagcctgcccgtcggacagtggcgctacttgctc
ggatacgaacgcttctga
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