Pseudoduganella umbonata: FCL38_12600
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Entry
FCL38_12600 CDS
T06138
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mum
Pseudoduganella umbonata
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mum03009
]
FCL38_12600 (rlmD)
Enzymes [BR:
mum01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FCL38_12600 (rlmD)
Ribosome biogenesis [BR:
mum03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FCL38_12600 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRM5-TYW2_MTfase
Methyltransf_31
Methyltransf_15
Methyltransf_ANTKMT
Methyltransf_25
MTS
RrnaAD
Cons_hypoth95
Methyltrans_SAM
TRAM
UPF0020
Methyltransf_11
CMAS
Methyltransf_23
PDGF
DOT1
Methyltr_RsmB-F
Motif
Other DBs
NCBI-ProteinID:
QCP11156
UniProt:
A0A4P8HPW1
LinkDB
All DBs
Position
complement(3082200..3083543)
Genome browser
AA seq
447 aa
AA seq
DB search
MQDNSIEIKSLDMDARGVGHMQDNEDGTPGKVVFVEGALPGERVSFEMLRKKKNWESGRV
TQIHRESAMRVQPKCVHFDYCGGCSMQHLEASAQVAIKQRVLEDNLWHLSRVKADVMMRP
LHGPTWGYRYRARLSSRYVAKKGTVLVGFHEKKSVFVADIQSCQILPKHVSDMMMPLRAL
IHSLSIYDKVPQIELAIGEDLTVLVMRNMVPLTGDDEAKLKAFADQFDIQWWLQPKGPDT
AYPFYPLDRQLHYLLPEFGIRMPFKPVDFTQVNHQINRVLVHKALRHLDVQPGERVADLF
CGIGNFTLPLATQARDVVGIEGSTALTERAQQNAVINGVGDKTTFYCRNLFEVTKDDLIA
LGKFDRILVDPPRDGAMALSLALAELKESNPELLPKRIVYVSCSPSTLARDAGVLVHRAG
YVLSQAGVMNMFPHTSHVESMAVFDLA
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacaacagcatcgaaatcaaatcgctcgacatggacgcgcgcggcgtcggccac
atgcaggataacgaagacggcacgccaggcaaggtggtgttcgtggaaggagcgctgccg
ggcgagcgcgtcagctttgaaatgctgcgcaagaagaagaactgggaatcgggccgcgtc
acgcagatccaccgcgagtcggccatgcgcgtgcagccgaaatgcgtgcacttcgactat
tgcggcggctgctcgatgcagcacctggaagcttcggcgcaggtggccatcaagcagcgc
gtgctggaagataacctgtggcacctgtcgagagtgaaggcggacgtgatgatgcgcccg
ctgcatggcccgacctggggctaccgctaccgcgcgcgcctgtcgtcgcgctacgtggcg
aagaagggcacggtgctggtcggcttccatgaaaagaaatccgtcttcgtggccgacatc
cagagctgccagatcctgccgaagcacgtgtcggacatgatgatgccgctgcgcgcgctg
attcattcgctgtcgatctacgacaaggtgccgcagatcgaactggcgatcggcgaagac
ctgacggtgctcgtcatgcgcaacatggtgccgttgacgggcgacgacgaggcgaagctg
aaagcctttgccgaccagttcgacatccagtggtggctgcagccgaagggcccggatacc
gcttatccgttctatccgctggaccggcaactgcactacctgctgccggaattcggcatc
cgcatgccgttcaagccggtcgatttcacgcaggtgaaccaccagatcaaccgtgtgctg
gtgcacaaggcgctgcgccacctggacgtgcagccgggcgagcgcgtggccgacctgttc
tgcggcatcggcaacttcacgctgccgctggcgacgcaggcgcgcgacgtggtgggcatc
gaaggcagcaccgcgttgacggagcgggcgcagcagaatgccgtcatcaacggcgtcggc
gacaagaccacgttctactgccgcaacctgttcgaggtgacgaaggacgacctgatcgca
ctgggcaagttcgaccgcatcctggtcgacccgccgcgcgatggtgcgatggcgctgtcg
ctggcattggccgagctgaaggaaagcaaccccgaactgctgccaaagcggatcgtctac
gtgtcgtgcagcccgtccacgctggcgcgcgatgccggcgtgctggtgcaccgcgccggc
tacgtgctgtcgcaggcgggggtgatgaatatgttcccgcatacgtcccatgtggaatcg
atggcggtgttcgacctcgcctga
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