KEGG   Pseudoduganella umbonata: FCL38_13425
Entry
FCL38_13425       CDS       T06138                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
mum  Pseudoduganella umbonata
Brite
KEGG Orthology (KO) [BR:mum00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mum03400]
    FCL38_13425
Enzymes [BR:mum01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     FCL38_13425
    5.6.2.6  RNA 3'-5' helicase
     FCL38_13425
DNA repair and recombination proteins [BR:mum03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    FCL38_13425
SSDB
Motif
Pfam: WH_Lhr DEAD_assoc DEAD Helicase_C ResIII Dioxygenase_N
Other DBs
NCBI-ProteinID: QCP11299
LinkDB
Position
complement(3254487..3256946)
AA seq 819 aa
MTGVDDWFAARGWTVFPFQRAVWEAALAGESGMLHATTGSGKTYAVWFAALLRAMAAQPR
KDKRKAAGLRVLWLTPMRALAADTLRALSDSAADLLPGWTIDARTGDTSSAARARQARRL
PEALVTTPESLSLMLSKADAQEQFSLLDMVIVDEWHELMGNKRGVQAQLALARLRNWNPG
LVVWGLSATLGNLQRAQEALLGPAAHGTIVEGSLRKEIVVDTLIPANPSRFPWAGHLGIQ
MLGPVIAEIERHATTLVFCNTRSQAELWYQNMLEARPDWAGLIALHHGSLDKEVRDWVEL
GLKRGTLKAVVCTSSLDLGVDFLPVERVLQIGSAKGIARLLQRAGRSGHAPGRVSRVTLV
PTQSLELLEAAAAIQAVQDRDIESRPVPDKPLDVLVQHLVTVALGGGFTSAALYGEVRTA
WSYRELTPEEWQWALDFVARGGQSLTVYPEYRRVLPDEAGVYRVPDAAIGRRHRMGIGTI
VSEAMIQVKFQSGGRIGTVEEGFIARLNKGDHFLFGGRVLEFLRVHEMTAYVKRATGARG
AVPRWQGGKMPMSSELAHAALEQMRLATEGIVRGPEMAAVRPLLDIQARWSALPTPQRTV
IESLHSREGHHLFMYPFAGRSVHIGLASLLSWRMGRMRPATFSIAVNDYGFELLAPEEVP
WPDVFAAGTGSGVALFTTEGLLEDVLASLNATELSQRRFREIARIAGLIFQGYPGQPKSN
RQLQASSSLFFEVFRKHDAGNLLLTQAQREVLEQELELKRLRATLEALQARAVSYHETKR
ATPFGFALMVERFREKLSTEKLSDRVARVLRELEKAAGP
NT seq 2460 nt   +upstreamnt  +downstreamnt
atgaccggggtcgacgactggttcgcggcgcgcggctggacggtctttccgttccagcgc
gccgtgtgggaggcggcgctggccggcgaatcgggcatgctgcatgccaccaccgggtcc
ggcaagacgtatgccgtgtggttcgccgcactgttgcgggcgatggcggcacagccgcgg
aaggataagagaaaggcggccggcttgcgggtcctgtggctgacgccgatgcgtgcgctg
gcggccgacacgctccgtgccctgtcggactcggcagcggacctgctgcccggctggacc
atcgatgcacggaccggcgacacctcgtcggccgcccgcgcgcggcaggccaggcgcctg
cccgaggcgctggtgacgacgccggaaagcctgtcgctgatgctgtcgaaggcggatgcg
caggagcagttctcgctgctggacatggtgatcgtcgacgaatggcacgagctgatgggc
aacaagcggggcgtgcaggcgcagctggcgctggcgcggctgcgcaactggaacccgggc
ctggtggtgtggggactgtccgccacgctgggcaacctgcagcgcgcccaggaagcgctg
cttggacccgctgcgcatggcacgatcgtcgaaggcagcctgcgcaaggagatcgtcgtc
gatacgctgatcccggccaatccgtcgcgctttccatgggccggccacctgggcatccag
atgctggggccggtcattgccgagatcgagcggcatgccaccacgctggtcttctgcaac
acccgctcgcaggcggaattgtggtaccagaacatgctggaagcgcggccggactgggcc
ggcctgatcgccttgcaccacggctcgctggacaaggaagtgcgcgactgggtcgaactg
gggctcaagcggggcacgctgaaggcggtggtgtgcacgtcgagcctcgacctgggggtc
gatttcctgccggtcgagcgggtgctgcagatcggcagcgcaaagggtatcgcccggctg
ctgcagcgggccgggcgctcgggccacgcgccggggcgcgtgtcgcgcgtgacgctggtg
cccacgcaaagcctggaactgctggaagcggccgcggcgatccaggcggtgcaggaccgc
gacatcgaatcgcgcccggtgccggacaagccgctcgacgtgctggtgcagcacctggtg
acggtggcgctgggcggcggcttcacgtccgcggcgctgtacggcgaggtgcgcacggcg
tggtcgtatcgcgagctgaccccggaggagtggcagtgggcgctcgatttcgtcgcgcgc
ggcggccagagcctgacggtgtacccggaataccggcgcgtgctgccggacgaggccggc
gtctaccgcgtgccggatgcggcgatcgggcggcgccaccggatgggcatcggcaccatc
gtgtccgaagcgatgatccaggtgaagttccagagcggcgggcggatcgggacggtggag
gagggcttcatcgcgcggctgaacaagggcgaccatttcctgttcggcgggcgcgtgctg
gagttcctgcgggtgcatgaaatgacggcctacgtgaagcgcgcgaccggcgccaggggg
gcggtgccgcgctggcagggcggcaagatgccgatgtcgtccgagctggcgcacgcggcg
ctggaacagatgcggctggcgaccgaaggcatcgtccgcgggccggagatggcggcggtg
cggccgctgctggacatccaggcgcgctggtcggcgttgccgacgccgcagcgcaccgtg
atcgaaagcctgcacagccgcgagggacaccatctgttcatgtacccgttcgccgggcgg
tcggtgcatatcgggctggcctcgctgctgtcctggcgcatggggcggatgcggccggcc
acgttctcgatcgccgtcaacgattacggcttcgaactgctggcgccggaggaggtgccg
tggccggacgtgtttgctgccggcaccgggagcggggtcgccctgttcacgacggagggg
ctgctggaagacgtgctcgccagcctgaacgccaccgagctgtcgcagcgccgcttccgc
gaaatagcccggatcgccggtctgatcttccagggctatccggggcagccgaaaagcaac
cggcaactgcaggcgtcgtcatcgctgttcttcgaggtattccgcaagcatgatgccggc
aacctgctgttgacgcaggcgcagcgcgaggtgctggaacaggaactggaactgaagcgc
ctgcgcgccacgctcgaagcattacaggcccgggcggtcagctaccatgagacgaaacgg
gccaccccgttcggctttgcgctgatggtggagcggttccgcgaaaaactcagtaccgaa
aagctgtcggaccgggtcgcgcgcgtgctgcgcgaactggaaaaggcggccgggccatga

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