Pseudoduganella umbonata: FCL38_14305
Help
Entry
FCL38_14305 CDS
T06138
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mum
Pseudoduganella umbonata
Pathway
mum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCL38_14305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mum03019
]
FCL38_14305
03009 Ribosome biogenesis [BR:
mum03009
]
FCL38_14305
Enzymes [BR:
mum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FCL38_14305
Messenger RNA biogenesis [BR:
mum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FCL38_14305
Ribosome biogenesis [BR:
mum03009
]
Prokaryotic type
rRNA processing factors
FCL38_14305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QCP11463
LinkDB
All DBs
Position
3460161..3463556
Genome browser
AA seq
1131 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSY
GEDRHGFLPFKEVARSYFREGIDVRNATIKDALREGQEIVVQVEKEERGNKGAALTSFIS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDLPQGMSVIARTAGIGRNVDELQ
WDLNYLMQLWRAIEGASKSASGAFLIYQESSLVIRAIRDYYQPDIGEILIDTDEIYEQAH
QFMSHVMPDMVHRVKRYSDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIETTAFNTNCEAAEEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQR
LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQ
VLRIIQEEAMKENSAAIHVQVPVDVAAFLLNEKRGEVLKIENRHRITVILVPNKHLDTPH
YKLERIKHDDPRLEEAPASYSMAEQAETDMGFAKRQKEEQKPRQEAVVKTITPSQPAPIV
DRTPAPAPVQPAAPAPVAAQAPAEKGFFAKLVSFFTGKTEEPAAPAAPAIVTKPAVAPVE
RADKNGRGPRARNPRGPKEREPGARDEAAKPAQEARPARPPRPPREPREKLEKFADKAVE
KVEGVEGVVVPRTERAERPERGERPQREPREARPPREPREQREPKAQPAEAKADELALAA
TGVGPVGTGTGTGTAVGVPAAAPLAAQAGEAPSLVKSTGNIGPEGEELDGEGGDEPRRRR
RRGGRNRNRREREGAEGEGIESADEFSTGTVEGDTVKIVTATVVTEQVHVSIREEAVAPA
DTAQAAAPAEPVAAAASEAVRDAAPAAEAQPQPVASAPVAEPAEAEIVQAPAAEALPPVT
ADAAPVAIEPAEAEVVQAPAAEPLPVAAQAAAETPAEMPAAAVAIEPAEAEVVQAPAAEP
LPVAVEAAVEPKAAEPAEAEVVDAPAAEPLPTATTATAPAAAAVTPVTEAGVAIPAAAEI
ATAEAVAAEKVATQPVPVTTAAELPAAQAPAPAPAPAPAPAAAPAQPAAAPADLQTILAA
AGLQMAATDPAKLRAAQEAAAQQEAPVRARRTRKPAPVVADEPLVQVDTRR
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaacgctacgcagcaggaagagctgcgcgtagccattgtcgat
ggtcagaaactgatcgacatcgacatcgaaaccgccggacgcgaacagcgcaagtccaat
atctacaaaggcgtcatcacccgtatcgaaccgtcgctggaagcgtgcttcgtcagctac
ggcgaagatcgccacggtttcctgccgttcaaggaagtagcgcgcagctatttccgtgaa
ggcatcgacgtgcgcaatgccaccatcaaggatgcgctgcgcgaaggccaggaaatcgtc
gtccaggtggaaaaggaagagcgcggcaacaagggcgcggcgctgacgtcgttcatttcg
ctggccggccgctacctggtgctgatgccgaacaacccgcgcggcggtggcgtttcccgg
cgcgtcgaaggcgaagagcgccaggaactgcgcgaaacgatggacaagctggacctgccg
cagggcatgtccgtgatcgcccgcactgccggcatcggccgcaacgtcgatgaactgcag
tgggacttgaattacctgatgcaactgtggcgcgccatcgaaggcgcgtcgaaatcggcc
tccggcgccttcctgatctaccaggaatcgtcgctcgtgatccgcgcgatccgcgattat
taccagcccgatatcggcgagatcctgatcgataccgacgagatctacgaacaggcccac
cagttcatgagccacgtgatgcccgacatggtgcatcgcgtaaagcgctacagcgacgac
gtgccgctgttctcgcgcttccagatcgaacaccagatcgaaacggcctacagccgcacg
gtaccgctgccttccggcggcgccatcgtgatcgaccacaccgaagcactggtgtccgtc
gacgtcaactcggcccgcgccacccgcggctccgacatcgagaccaccgccttcaacacc
aactgcgaagcggccgaggaagtggcccgccagttgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaagtggcgaagaaccagcgcgaagtggaacagcgc
ctgaaggacgcgctgcaccatgaccgcgcgcgcgttcagatgggcaagatttcccgcttc
ggcctgatggaactgtcgcgccagcgcctgcgcccttcgctgtccgaaggttcgcacgtg
acgtgcccgcgctgctccggcaccggccacatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacagcgccgcgatccacgtgcag
gtgccggtcgacgtggccgccttcctgctgaacgaaaagcgcggcgaagtgctcaagatc
gagaatcgccaccgcatcaccgtgatcctggtgccgaacaagcacctcgacacgccgcat
tacaagctcgagcgcatcaagcacgacgatccgcgcctggaagaagccccggccagctat
tcgatggccgagcaggcggaaaccgacatgggctttgccaagcgccagaaggaagagcag
aagccgcgccaggaagccgtcgtgaagacgatcacgccaagccagccggccccgatcgtc
gaccgtacgccggccccggcgccggtccagccggcggcccccgcaccggttgcggcacag
gcgccggccgaaaaaggcttctttgccaagctggtgtcgttctttaccggcaagaccgag
gaaccggcagcgccggccgccccggccatcgtgacgaaaccggcggttgcgccggtcgag
cgcgccgacaagaacggccgtggcccgcgcgcccgcaacccgcgcggtccgaaggaacgc
gaaccgggtgcccgcgacgaggcagcaaagccggcacaggaagcccgcccggcccgcccg
ccgcgcccgccacgcgagccgcgtgagaagctggaaaaattcgccgacaaggcggtcgag
aaagtggaaggcgtcgaaggcgtcgtggtgccgcgcaccgagcgtgccgagcgcccggaa
cgtggcgagcgcccgcagcgtgaaccgcgcgaagcccgtccgccgcgcgaaccgcgcgag
cagcgtgaaccgaaagcccagccagccgaagccaaggccgatgaactggcactggccgcg
accggtgttggcccggtcggcaccggcaccggcactggtaccgccgtcggcgtgccggct
gccgcgccgctggccgcgcaggcaggcgaagcgccgagcctggtgaaatccaccggcaac
atcggaccggaaggcgaggaactggatggcgaaggcggcgacgagccgcgccgccgccgc
cgtcgtggcggtcgcaaccgcaatcgccgcgagcgtgaaggcgccgaaggcgaaggcatc
gagtccgccgacgagttcagcaccggcacggtcgaaggcgataccgtcaagattgttacc
gcgaccgtggtgaccgagcaggttcacgtttccatccgtgaagaagcggtagcgccggcc
gacactgcccaggctgcagctccggccgagccggtggccgccgccgcctcggaagcggtg
cgcgacgcggctccggctgccgaagcgcaaccgcaaccggtggcatccgcaccggtcgcc
gagcctgccgaagcggaaatcgtccaggcgccggctgcggaagccctgccgccggtaacg
gccgatgccgcaccggtagcgatcgaacctgccgaagcggaagtggtgcaagccccggcc
gccgagccgctgcccgtggcagcgcaggcagccgcggaaacgccagcggaaatgccagct
gcggcggtcgccatcgagccggccgaagcggaagtggtgcaggcgcctgcggccgaaccg
ctgcccgtggccgtggaagctgccgtggaaccgaaagccgccgagcctgccgaagcggaa
gtcgtcgatgcgccggccgccgaaccgctgccgaccgccacgaccgcgacggcacctgcc
gccgccgccgtgacgccggtgaccgaagcgggcgtggcgattcctgctgctgccgagatc
gccacggcggaagccgtggccgccgaaaaggtggccacgcagccggtgcctgtcacgacg
gccgccgagctgcctgccgcacaagctcctgctcctgctcctgctcctgctcctgctccc
gctgctgctccggcacagcctgccgcagcgccggcggatctgcaaacgatcctggcagcg
gccggcctgcagatggctgccacggatccggccaagctgcgcgccgcccaggaagcggcc
gcgcagcaagaggcgccggtgcgggcacgccgcacccgcaagccggcaccggtggtggcg
gacgagccgctggtgcaggtagacacccgacgctga
DBGET
integrated database retrieval system
