Pseudoduganella umbonata: FCL38_15505
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Entry
FCL38_15505 CDS
T06138
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mum
Pseudoduganella umbonata
Pathway
mum03030
DNA replication
mum03430
Mismatch repair
mum03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FCL38_15505 (dnaE)
03430 Mismatch repair
FCL38_15505 (dnaE)
03440 Homologous recombination
FCL38_15505 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mum03032
]
FCL38_15505 (dnaE)
03400 DNA repair and recombination proteins [BR:
mum03400
]
FCL38_15505 (dnaE)
Enzymes [BR:
mum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FCL38_15505 (dnaE)
DNA replication proteins [BR:
mum03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FCL38_15505 (dnaE)
DNA repair and recombination proteins [BR:
mum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FCL38_15505 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
QCP11668
LinkDB
All DBs
Position
complement(3748085..3751624)
Genome browser
AA seq
1179 aa
AA seq
DB search
MPADQSVIQPDEPAGPPGPDFVHLRVHSEYSIVDGLVRIDDLVKAAVKDRQGALAVTDLS
NLFGMVKFYKSARGKGVKPVIGCDVWITNDDNREKPCRLLLLAKNRVGYLQLCELLSMAW
LTNQYKGRAELRTEWLEALKDQTYDVMPGESGANGLIALSGAQFGDIGCAIDNGNLELAE
KNARKWSAIFPGHFYIEIQRAGQPNQEAQVRHSVALAARLRLPVVATHPVQFMSEQEFIA
HEARICIAEGEMIANAKRPKRFNEQMRFLTQQEMAILFEDLPAALQNSVEIAKRCNVTLT
LGKPQLPNFPTPGMTIDEFLIAETKKGLEERLVQLFPDPAVRERNRQRYEERLEFENKTI
INMKFPGYFLIVAEFIQWGKNNGVPIGPGRGSGAGSLVAYALKITDLDPLKYNLLFERFL
NPERVSMPDFDIDFCQEKRELVIQHVKDLYGRDAVSQIATFGTMAAKGAIRDVGRVLDFG
YNFCDGISKLIPFKPGKPVSIAEAIEEEPLLKERLENEEEVRQLLDLAQQVEGITRGIGM
HAGGVLIAPGKLTDFCPLYTQSGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVN
YIRELDPAMKDFNLETLPLDDRASYDLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDII
ALVALYRPGPMDLIPDFCKRKHGEKFEYPDPRTEGILSETYGIMVYQEQVMQMAQIIGGY
SLGGADMLRRAMGKKKAEEMAEHREIFRKGAGERGLTTEKADEIFDLMEKFAGYGFNKSH
AAAYALLSYHTAYLKQHHTAAFMAANMSLTMDDTEKVKILVEDSIEVCGLTILPPDINLS
AYRFRPDGPPPSVTGKKVTNIRYGLGGVKGAGQNAIEAIIAAREADGPFVSLFDFCKRVD
KRQINRRTIEALIRSGAFDCFKVDRSVLFASVAFAMECAEQELKAANQVSLFGGDDSDLV
APPEYVQATPWTDRQKLAEEKIALGFYLSGHMFDSYAQEARRFARTKLSELEPSREPRMM
CGVITGIRTQMTQRGKILIVSLDDKSAVVEVTVYNEIFEANKKAFKEDEFLAVTGKVSED
RFTGGLRISAEKVYDIVSARLQFGRQMGWLLPAAVAPAKLHEVLAPHRDDYGLPVQMRIK
PQGIDCTLQLGDNWHVLPSDELTLALEQVLGAKDVAVEY
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgcccgctgatcagtccgttattcagcccgacgaacccgcagggccccccggccccgat
ttcgtccacctgcgggtccattcggagtactcgatcgtcgacggcctggtgcgcatcgac
gacctggtcaaggccgccgtcaaggacaggcagggtgcgctggccgtgaccgacctgtcg
aacctgttcggcatggtcaagttctacaagagcgcgcgcggcaagggcgtcaagccggtg
atcggctgcgatgtgtggatcaccaacgatgacaaccgcgaaaaaccctgccgcctgctg
ctgctggcgaaaaaccgcgtgggctacctgcagctgtgcgaactgctgtcgatggcgtgg
ctgaccaaccagtacaagggccgcgccgagctgcgcaccgaatggctggaagcactgaag
gaccagacctatgacgtgatgcccggcgagagcggtgccaacgggctgatcgcgctgtcc
ggcgcgcagttcggcgacatcggctgcgcgatcgacaacggcaacctggagctggccgag
aagaacgcgcgcaagtggtctgccatcttcccggggcatttctacatcgagatccagcgc
gccggccagccgaaccaggaagcgcaggtgcgccattcggtggcgctggccgccaggctg
cgcctgccggtggtggccacccacccggtgcagttcatgtccgagcaggaattcatcgcg
cacgaggcgcgcatctgtatcgccgaaggcgagatgatcgccaatgcaaagcggccgaaa
cgcttcaacgagcagatgcgcttcctgacgcagcaggagatggcgatcctgttcgaggat
ctgccggccgcattgcagaactcggtggaaatcgcgaaacgctgcaacgtcacgctcacg
ctgggcaagccgcagctgccgaatttccccacgccgggcatgacgatcgacgaattcctc
atcgccgaaacgaagaagggcctggaagagcgcctggtgcagctgttccccgacccggcg
gtgcgggaaaggaaccgccagcgctacgaggagcggctcgagttcgagaacaagacgatc
atcaacatgaagttccccggctacttcctgatcgtggccgagttcatccagtggggcaag
aacaacggcgtgccgatcggcccgggccgcggttcgggcgccggttcgctggtggcgtat
gcgctgaagatcaccgacctcgatccgctgaagtacaacctgctgttcgagcgcttcctg
aacccggaacgggtctcgatgcccgacttcgacatcgacttctgccaggaaaagcgcgaa
ctggtgatccagcacgtgaaggacctgtatggccgcgacgccgtgtcgcagatcgccacc
ttcggcacgatggccgcgaaaggcgcgatccgcgacgtgggccgggtgctcgatttcggc
tacaacttctgcgacggcatttcgaagctgattccgttcaagccgggcaagccggtgtcg
atcgccgaggcgatcgaggaagaaccgctgctgaaggagcgcctcgagaacgaggaggaa
gtacgccagctgctggacctggcgcagcaggtggaaggcattacccgcggcatcggcatg
cacgcgggcggcgtgctgatcgcgccgggcaagctgaccgatttctgcccgctgtacacg
cagtccggcgattcgggcgtggtctcgcagtacgacaaggacgacgtggaagccgtgggc
ctggtgaagttcgacttcctgggcctgacgacgctgacgatcctcgaccgcgcggtgaac
tacatccgcgagctcgatccggcgatgaaggacttcaacctggagacgctgccgctggac
gacagggcctcgtacgacctgctgaccaaggccaagacggtggccgtgttccagctggag
tcgcgcggcatgcagggcatgctgaaggatgcgcgccccgaccgcttcgaggacatcatt
gcgctggtggcgctgtaccgcccgggcccgatggacctgattcccgacttctgcaagcgc
aagcacggcgagaagttcgagtatccggacccgcgcaccgagggcatcctgtccgagacc
tacggcatcatggtctaccaggagcaggtgatgcagatggcgcagatcatcggcggctac
tcgctgggcggcgccgacatgctgcgccgcgcgatgggcaagaagaaggccgaggaaatg
gccgagcaccgcgagatcttccgcaagggtgccggcgagcgcgggctgaccaccgagaag
gccgacgagatcttcgacctgatggagaagttcgccggctacggtttcaacaagtcgcac
gccgccgcgtacgcgctgctgtcgtatcacacggcttacctgaagcagcaccatacggcc
gcgttcatggcggccaacatgtcgctgacgatggacgacaccgaaaaggtcaagatcctc
gtcgaggactcgatcgaggtgtgcggcctgacgatcctgccgccggacatcaacctgtcg
gcctaccgcttccgcccggacggcccgccgccgtccgtcaccggcaagaaggtgaccaac
atccgctacggcctgggcggcgtgaagggcgccggccagaacgcgatcgaggcgatcatt
gccgcgcgcgaggccgatggcccgttcgtcagcctgttcgatttctgcaagcgggtggac
aagcgccagatcaatcgccgcaccatcgaggcgctgatccgctccggcgcattcgactgt
ttcaaggtcgaccgttccgtgctgttcgcctcggtagccttcgcgatggaatgcgccgag
caggagctgaaggcggccaaccaggtgagcctgttcggcggcgacgacagcgacctggtc
gccccgcccgaatacgtgcaggccacgccgtggaccgaccgccagaagctggccgaggaa
aagatcgcgctgggcttttacctgtccggccacatgttcgactcgtatgcgcaggaagcg
cggcgctttgcccgcaccaagctgtcggaactggagccgtcgcgcgagccgcgcatgatg
tgcggcgtgatcaccggcatccgcacgcagatgacgcagcgcggcaagatcctcatcgtc
agcctcgacgacaagagcgccgtggtggaagtgacggtctacaacgagatcttcgaagcc
aacaagaaggccttcaaggaagacgaattcctggccgtaaccggcaaggtgtcggaagac
cgcttcaccggcggcctgcgcatctcggccgagaaggtgtacgacatcgtctccgcgcgc
ctgcagttcggccgccagatgggctggctgctgccggccgccgtggcaccggccaagctg
cacgaagtgctggccccgcaccgcgacgactacggcctgcccgtgcagatgcgcatcaag
ccgcagggcatcgactgcacactgcagctgggcgacaactggcacgtgttgccctccgac
gaactcacgctggcgctggagcaggtgctgggcgcgaaggacgtggcggtggagtactag
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