Pseudoduganella umbonata: FCL38_15620
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Entry
FCL38_15620 CDS
T06138
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mum
Pseudoduganella umbonata
Pathway
mum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCL38_15620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mum03019
]
FCL38_15620
Enzymes [BR:
mum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FCL38_15620
Messenger RNA biogenesis [BR:
mum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FCL38_15620
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QCP11690
LinkDB
All DBs
Position
complement(3783267..3784793)
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AA seq
508 aa
AA seq
DB search
MSDIETTAQPAAPAQVRFSDFGLSPDIQRALTEQGYEHPTPIQAQAIPVVLQGRDVMGAA
QTGTGKTAGFSLPIIQLLLAHANASMSPARHPVRALVLAPTRELAVQVAENVANYCKHTP
LRSTVVYGGVDIKPQAAIMRGGVEIVIATPGRLLDHVEQKNISLSQVQMLVMDEADRMLD
MGFLPDLQRIINLLPKQRQNLMFSATFSPEIRKLASTFLNDPVTIEVARSNATADKVTQV
VYKVTEENKREAVAHILRQRELKQVIVFSNTKIGASRLARGLEQEGMKASAIHGDKTQQE
RMAALDAFKRGEVDVLVATDVAARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRAGASG
DAISIYSDKDERLLADIEKLIKQTIKRGELEGFRPGARAGGERGGEYNGERSGERSGERS
AERRPPRRGAEGERPPAASYAGNGRPGPGADRGPRPSGPRRDKVDPWFLKPYEPSRPNAA
TTTSTPSSSSPAKPKPRLAALLGGLRKE
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacatcgaaacaaccgcccagcctgcggcgcccgcccaggtgcgtttctccgac
ttcggcctctctcccgacatccagcgtgccctgaccgaacagggctatgagcacccgacg
ccgatccaggcgcaggcgattcccgtggtgttgcaggggcgcgacgtcatgggtgcggcc
cagaccggtaccggtaaaaccgccggcttttcgctgccgatcatccagctgctcctggcg
catgcgaacgcgagcatgagcccggcgcgccatccggtgcgcgcgctggtgctggcgccg
acccgcgaactggccgtgcaggtggccgagaacgtcgcgaactattgcaagcacacgccg
ctgcgctcgaccgtggtatacggcggcgtcgacatcaagccgcaggccgccatcatgcgc
ggcggcgtcgagatcgtgatcgccacgccgggccgcctgctggaccacgtggaacagaaa
aacatctcgctgtcgcaggtgcagatgctggtgatggacgaggcggaccgcatgctcgac
atgggcttcctgccggacctgcagcgcatcatcaacctgctgccgaaacagcgccagaac
ctgatgttctcggccacgttctcgcccgagatcaggaagctggcatcgaccttcctgaac
gacccggtcaccatcgaagtcgcgcgcagcaatgccacggccgacaaggtcacccaggtg
gtctacaaggtcaccgaggaaaacaagcgcgaagccgtcgcccatatcctgcgccagcgc
gagctgaaacaggtgatcgtgttctcgaacacgaagatcggcgcatcgcgcctggcgcgc
ggcctggagcaggagggcatgaaggcttccgcgatccacggcgacaagacgcagcaggaa
cgcatggccgcgctggatgcgttcaagcgcggcgaagtggacgtgctggtggccaccgac
gtggcggcgcgcggcctcgacatctccgacctgccgtgcgtgatcaactacgacctgccg
tacaacgcggaagactatgtgcaccggatcggccgtaccggccgcgccggcgcctcgggc
gatgcgatctcgatctactccgacaaggacgagcgcctgctggccgacatcgaaaagctg
atcaagcagaccatcaagcgcggcgaactggaaggcttccgtccgggcgcgcgcgccggc
ggggaacggggcggcgaatataatggtgaaagaagcggtgaaagaagcggtgaacgaagc
gctgaacgccgtccgccgcgccgcggtgccgagggcgagcgcccgccggccgccagctat
gccggcaacggccgcccgggccccggcgccgaccgcggcccgcgcccgtccggtccgcgc
cgcgacaaggtcgacccatggttcctgaaaccgtacgagccgagccgtccgaacgccgcc
acgaccacatccacgccgtcgtcctcgtcgccagcgaaacccaagccgaggctggcagcg
ctgctcggcggcctgcgcaaggaatga
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