Pseudoduganella umbonata: FCL38_16245
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Entry
FCL38_16245 CDS
T06138
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
mum
Pseudoduganella umbonata
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mum03400
]
FCL38_16245
Enzymes [BR:
mum01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
FCL38_16245
DNA repair and recombination proteins [BR:
mum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
FCL38_16245
Prokaryotic type
FCL38_16245
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
RNA_pol_inhib
Motif
Other DBs
NCBI-ProteinID:
QCP11795
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All DBs
Position
3920954..3922390
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AA seq
478 aa
AA seq
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MPQSNSTPRGALVWFRRDLRAFDHAALHHALLAGAPVFCTFVFDGPILDGLPRDDRRVAF
IHASLAELATELEALGGHLIVRHGDARREIPALAAELDVAAVYANEDYDPAAIARDSAVG
ESLAAAGRTLALFKDHVIFARSEVLSQAGKPLGVFTPYKNAWKKRLEAQPDALAPWSIEP
HTAAFAPGRSQLLALQDIGFDGTDLSAVGIAPGMAGGAALFEAFQPHLAGYGTERDYPAR
DGTSHLSLHLRFGTVSIRHLVRTVLQLSERGQAGEGGATWLSELVWRDFYQMILFHNPHV
VHASFKPLYDKVDWETGPAADALFAAWCDGRTGYPLVDAAMVQLNTTGFMHNRLRMVTAS
FLCKDLGIDWKRGEAYFALKLNDYELASNNGGWQWAASSGCDAQPFFRIFNPVTQSERFD
RDGEFIRHYLPQLRQLSPKEIHAPWLNGGADGYPAPIVDHAEARQRTLERFEVVKARG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgccccaaagcaattccactccgcgcggcgccctcgtgtggttccgccgcgacctgcgc
gccttcgatcatgccgccctgcaccatgcgctgctggcgggcgcccctgtcttctgtacc
ttcgtcttcgacggcccgatcctggacggcttgccgcgcgacgaccgccgcgtcgccttc
attcatgcctcgctggcggagctcgcgactgaactggaggctttgggtggccacctgatc
gtccggcatggcgacgcgcgccgcgagatcccggcgctggcggccgaactggacgtcgct
gccgtgtacgccaacgaagactacgacccggccgcgatcgcgcgcgacagcgccgtcggc
gaatcgctggccgcggcgggccgcacgctggcgctgttcaaggaccacgtgatctttgcc
cggagtgaagtgctgtcgcaggcgggcaagccgctcggcgtgttcacgccttacaaaaac
gcgtggaaaaagcgcctcgaagcgcagcccgatgcgctcgcgccatggtcgatcgagccg
cacacggccgcttttgccccgggccgctcgcaattgcttgcgctgcaagacatcggtttt
gacggcaccgacctgtccgctgtcggcatcgcgccgggcatggctggtggagccgcgctg
ttcgaagccttccagccgcacctggccgggtacggtaccgaacgcgattatccggcgcgc
gacggcacgtcgcacctgtcgctgcacctgcgcttcggcaccgtgtcgatccgccacctg
gtgcgcacggtactgcaactgtcggagcgcgggcaggccggcgaaggcggcgccacgtgg
ctgtccgaactggtgtggcgcgatttctaccagatgatcctgttccacaacccgcacgtc
gtccatgcgtcgttcaagccgttgtacgacaaggtggactgggaaaccggcccggcggcc
gacgcgctgtttgccgcatggtgcgacggccgcaccggctacccgctggtcgatgccgcc
atggtccagctcaacaccaccggcttcatgcacaaccggctgcgcatggtgaccgccagc
ttcctgtgcaaggacctgggcatcgactggaaacgcggcgaggcgtatttcgcgctgaaa
ctgaacgattacgaactggcgtccaacaacggcggctggcagtgggcggcatcgagcggc
tgcgatgcgcagccgttcttccggatcttcaacccggtcacgcaatcggagcggttcgac
cgggacggcgaattcatccggcattacctgccgcagctgcgccagctgtcgccgaaagaa
atccatgcgccgtggctgaacggcggcgcggacggctacccggcccccatcgtcgaccac
gccgaagcgcggcaaaggaccctggaacgtttcgaggtcgtcaaggcgcgtggctga
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