Pseudoduganella umbonata: FCL38_16330
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Entry
FCL38_16330 CDS
T06138
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
mum
Pseudoduganella umbonata
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mum03016
]
FCL38_16330
Enzymes [BR:
mum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FCL38_16330
Transfer RNA biogenesis [BR:
mum03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FCL38_16330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QCP11810
LinkDB
All DBs
Position
complement(3940456..3942546)
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AA seq
696 aa
AA seq
DB search
MNVFFEESGDFKVGQVLSTAGEAYQVEMASGKRTKVKAKDVLLQYDKPAPEELLEQARAV
AADVDLDFLWEVAGQEEFGFAELGAEYFGHAPLPAEAAGLILALHTAPVYFHKKGRGRYK
AAPEQTLKAALAGIEKKKQQAIVQQGYVDELKADRLPPSMAGIVHQLLFKPDKNTIEFKA
LEAACNELHTTPARLMLAVGGIGSAKDLHMARFLFESFPRGHGFPEVAVPPPPANLPVAA
VEAFSIDDVTTTEIDDAMSIVHLDGGKVRIGIHIAAPGLAIRPDDAIDKIARARLSTVYM
PGDKITMLPDSVVEAYTLAEGKTCPALSLYATLDTADWTVISTETRAEMVPIANNLRHND
LDDVVNEETLASGEGDYPRKAELTLLWAWAQHLEAGRMAKREAFGLRPEQNNRVDFNFYV
EDDVVTITRRKRGAPLDKIVAEMMIFANSTWGKLMHDHGVPGIYRSQGRGVGGWNAKMQV
RMLTHAAPHEGLGVDQYAWSTSPLRRYTDLVNQWQILAVAEKGVMAPLVAPFKHKDANLF
AIVSAFDAAYAAYADFQANMERYWCLRWLGQENKHQVDAVVLKDEVLRLTDIPLVIRLPG
MPSAARGAAVKLDVIRWDEVDLTIETRLLEIQEAAPAAVDFEEEEEEGDADKTLAGETVP
ELVADPDQPADEKAEVAEAAADAADADEAATPPAAG
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtcttttttgaagaatccggcgatttcaaggtcggacaagtgctgtccaccgcc
ggcgaggcttaccaggtcgagatggccagcggcaagcgcaccaaggtaaaggccaaggac
gtgctgctgcagtacgacaagccggcccccgaggagctgctcgagcaggcccgcgcggtg
gccgccgatgtcgacctggatttcctgtgggaggtggccggccaggaggagttcggtttc
gcggaactgggcgccgagtacttcggccatgcgccgctgcccgccgaggcggcggggctg
atcctggcgctgcatacggcgccggtgtacttccacaagaagggccgcgggcgctacaag
gccgcgcccgagcagaccctgaaggcggcgctggccggcatcgagaagaagaagcagcag
gccatcgtccagcagggctacgtggacgagctgaaggccgaccgcctgcctccttcgatg
gccggcatcgtgcaccagctgctgttcaagccggacaagaacaccatcgaattcaaggcg
ctcgaagcggcctgcaatgaactgcataccaccccggcgcgcctgatgctggcggtgggc
ggcatcggctcggccaaggacctgcacatggcccgcttcctgttcgagtcgttcccgcgc
gggcacggcttcccggaggtggcggtgccgccgccgccggccaacctgccggtcgccgcg
gtcgaggcgttctcgatcgacgatgtgacgacgaccgagatcgacgatgcgatgtcgatc
gtccacctggacggcggcaaggtgcgcatcggcatccacatcgccgcgccgggcctggcc
atccggccggacgatgcgatcgacaagatcgcacgtgcgcgcctgtcgaccgtctatatg
ccgggcgacaagatcacgatgctgccggattcggtggtcgaggcctacacgctggccgaa
ggcaagacctgcccggcgctgtcgctgtacgccacgctcgataccgccgactggaccgtg
atctcgaccgagacgcgcgccgagatggtgccgatcgcaaacaacctgcgccacaacgat
ctcgacgacgtggtgaatgaagaaaccctcgcgagtggcgagggcgactatccgcgcaag
gccgagctgaccttgctgtgggcctgggcgcaacacctggaagcgggccgcatggccaag
cgcgaggcgttcgggctgaggccggagcagaacaaccgcgtcgacttcaatttctatgtc
gaagacgacgtcgtcacgatcacgcgccgcaagcgcggcgcaccgctggacaagatcgtg
gccgagatgatgatcttcgccaacagcacctggggcaagctgatgcacgaccacggcgtg
ccgggcatctaccgcagccaggggcgcggcgtgggcggctggaacgccaagatgcaggtg
cgcatgctgacccatgccgcgccgcacgagggactcggtgtcgaccagtacgcgtggagc
acgtcgccgctgcgccgctacacggacctggtcaaccagtggcagatcctggccgtcgcc
gagaagggcgtgatggcgccgctggtcgcaccgttcaagcacaaggatgcgaacctgttc
gccatcgtctccgcgttcgacgccgcgtatgccgcctatgccgacttccaggcgaacatg
gaacgctactggtgcctgcgctggctcggccaggaaaacaagcaccaggtcgacgccgtg
gtgctgaaggatgaagtactgcgcctgaccgacatcccgctggtgatccgcctgcccggc
atgccttccgccgcgcgcggcgccgccgtcaagctggacgtgatccgctgggacgaagtc
gacctgacgatcgagacgcgcctgctggaaatacaggaagccgccccggccgccgtcgac
ttcgaagaagaagaggaagaaggagacgcggacaagacgctggccggcgaaaccgtgccg
gaactggtcgccgatcccgaccagcccgccgacgagaaggcggaagtggccgaagcggcc
gccgacgccgccgacgccgacgaagccgccaccccgcccgctgccggctga
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