Pseudoduganella umbonata: FCL38_16445
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Entry
FCL38_16445 CDS
T06138
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
mum
Pseudoduganella umbonata
Pathway
mum02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FCL38_16445
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
mum02022
]
FCL38_16445
02035 Bacterial motility proteins [BR:
mum02035
]
FCL38_16445
Two-component system [BR:
mum02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
FCL38_16445
Bacterial motility proteins [BR:
mum02035
]
Pilus system
Twitching motility proteins
FCL38_16445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
HTH_28
AAA_5
AAA_22
HTH_23
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QCP11833
UniProt:
A0A4P8HQ12
LinkDB
All DBs
Position
complement(3966030..3967550)
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AA seq
506 aa
AA seq
DB search
MSSTSRSSPRVLVVDDEDDLRDLLEITLLKMGLDVDGAADLASARALLAAHDYDLVLTDM
RLPDGLGLDLVREIAASGRILPVAVVTAFGSAENAVVALKAGAFDYVTKPLQLDQLRQMV
QSALKLNVPAGPAVPGAEPVDSRLKGQSAAMQALRAQIARLARSMAPIAITGESGSGKEL
AAREIHAQGARADKPFIAVNCGAIPEALMEAEFFGYRKGAFTGAADERDGFFQAANGGTL
MLDEVADLPLPMQVKLLRAIQERRVRKIGATAEEPVDVRIVSATHQDLARCVEQGRFRQD
LFYRLNVIELSLPPLRERLDDLPVLTGAILARLTGAGGQPATLGPGVLEALRGYSFPGNV
RELENILERALAFSNDGVIGVADLALKGARLAEPQAAAPAPAPAASSAASSAPVLTPVST
PVSAPAAVPPGALGPGPAGERMPPLPDLSVLPSNLPAYLERVEREIIVRALDQTQYNRTQ
AAQLLGISFRQLRYQMQKLGIQEPEG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgagttccacctcccgcagttctccccgcgtcctggtggtggacgatgaagacgacctg
cgcgacctgctggagatcacgctgctcaagatgggactggacgtggacggcgcggccgac
ctggccagcgcccgcgcgctgctggccgcgcacgactacgacctggtgctgacggacatg
cgcctgccggacggcctgggcctcgacctggtgcgcgagatcgccgccagcggccgcatc
ctgccggtggccgtggtcaccgccttcggcagcgcggaaaacgccgtggtggcactgaag
gccggtgccttcgattacgtgacgaagccgctgcagctcgaccagctgcgccagatggtg
cagtcggcattgaagctgaacgtgcccgccggccccgccgtgccgggcgcggagccggtg
gacagccgcctgaaagggcaatcggcggccatgcaggcgctgcgggcgcagatcgcccgg
ctggcccgctcgatggcgccgatcgcgatcaccggcgaatcggggtccggcaaggaactg
gccgcccgcgagatccatgcgcagggcgcgcgcgccgacaagccgttcatcgccgtcaac
tgcggggcaatccccgaggcgctgatggaagccgaattcttcggctaccgcaagggcgca
ttcaccggcgcggcggacgagcgcgacggcttcttccaggccgccaacggcggcacgctg
atgctcgacgaagtggcggacctgccgttgccgatgcaggtcaagctgctgcgcgcgatc
caggagcggcgcgtgcgcaagatcggcgccaccgccgaggaaccggtggacgtgcgcatc
gtcagcgccacccaccaggacctggcgcgctgcgtggagcagggccggttccggcaggac
ctgttctatcgcctgaacgtgatcgagctgtcgctgccgccgctgcgcgaacggctcgac
gacctgccggtgctgaccggcgcgatcctggcccggctgaccggcgcgggcggacagccg
gccacgctggggccgggcgtcctggaggcgctgcgcggctacagttttcccggcaacgtg
cgcgagctggaaaacatcctggaacgggcgctggcgttttccaacgacggcgtgatcggc
gtggccgacctggcgctgaagggcgccaggctggccgaaccccaggcggcggccccggca
cccgcgcctgccgcgtcgtcggccgcgtcgtcggccccggtgcttacgccggtttccact
ccggtttcggccccggccgcggtgccgccgggcgcccttgggccggggccggccggcgag
cggatgccgccattgcccgacctgtcggtgctgccctcgaacctgccggcctacctggag
cgggtggagcgggagatcatcgtgcgcgccctcgaccagacgcagtacaaccgcacccag
gccgcgcaactgctcggcatcagtttccggcagctgcgctaccagatgcagaaactgggg
atccaggagccggagggctga
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