Pseudoduganella umbonata: FCL38_18735
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Entry
FCL38_18735 CDS
T06138
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mum
Pseudoduganella umbonata
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mum03016
]
FCL38_18735
Enzymes [BR:
mum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FCL38_18735
Transfer RNA biogenesis [BR:
mum03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FCL38_18735
Prokaryotic type
tRNA splicing ligases
FCL38_18735
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QCP12231
UniProt:
A0A4V1EDT8
LinkDB
All DBs
Position
complement(4497708..4498940)
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AA seq
410 aa
AA seq
DB search
MSADYDTMEVKGGRPVKMWTHGVPVEPEAKEQLANTAKMPFIYKHIAVMPDVHLGKGSTI
GSVIPTLGAVIPAAVGVDIGCGMMAAKTTLTANDLPDNLGPLRNAIEKAIPHGLSPKTRG
FKGRDAGSWQDPPSAVDAAWSQLKDEFDVICAKTPKLRHTNNYKHLGTLGTGNHFIEVCL
DEEGAVWLMLHSGSRGVGNAIGTHFIELAQQDMRTHLANLPDRDLAYLKEGTQHYDDYVE
AVGWAQKFARMNREVMMQNLVKAVRTVIRKPFETHVEAVNCHHNYVQKERHFGQDVLVTR
KGAVSARAGELGIIPGSMGARSYIVRGKGNEDSFTSCSHGAGRTMSRSEAKRRFTREDQV
RATQGVECRKDEGVVDEIPMAYKDIDAVMHAQRDLVEVVHTLKQVVCVKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcagattacgacacgatggaggtgaagggcggccgtcccgtcaagatgtggacg
cacggcgtgcctgtagagccggaagcgaaagagcaactggcgaacacggcaaagatgccc
tttatttacaagcacatcgccgtgatgccggatgtccacctgggcaagggttcgacgatc
ggcagcgtgatccccacgctgggcgctgtcatcccggccgcggtaggcgtcgacatcggc
tgcggcatgatggccgccaagactacgctgaccgccaacgacctgccggacaacctgggg
ccactgcgcaacgcgatcgaaaaggcgattccgcatggcctgtcgccgaaaacccgcggc
ttcaagggccgcgacgcagggtcgtggcaggatccgccatccgccgtcgacgctgcctgg
tcccagctgaaggacgagttcgacgtaatctgcgccaagacgccgaagctgcggcacacc
aacaactacaagcacctgggcacgctcggcaccggcaatcacttcattgaagtctgcctc
gatgaggaaggcgccgtatggctgatgctgcactccggttcgcgtggtgtcggcaatgcg
atcggcacgcacttcatcgaattggcgcagcaggacatgcgcactcacctggccaacctg
ccggaccgcgatctcgcgtatctgaaggaaggcacgcagcattacgatgactacgtggaa
gcggtaggctgggcgcagaaattcgcccgtatgaaccgcgaggtcatgatgcagaacctg
gtcaaggccgttcgcacggttatcaggaagccgttcgagacgcacgtggaagccgtcaac
tgccaccataactacgtacagaaggagcgtcacttcggccaggatgtcctggtgacgcgc
aagggggccgtgtcggccagggccggcgaactgggcatcatcccgggatccatgggcgca
cgcagctacatcgtgcgcggcaagggcaacgaagacagcttcaccagttgcagccacggc
gccggccgcacgatgagccgcagcgaggcgaagcgccgcttcacgcgcgaagaccaggtg
cgcgcaacccagggcgtggaatgccgcaaggacgaaggcgtggtggacgagattccgatg
gcctacaaggatatcgacgccgtgatgcatgcccagcgcgacctggtcgaagtggtgcat
acgctgaagcaggtcgtctgcgtgaagggctga
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