Pseudoduganella umbonata: FCL38_20005
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Entry
FCL38_20005 CDS
T06138
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
mum
Pseudoduganella umbonata
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mum03000
]
FCL38_20005
Transcription factors [BR:
mum03000
]
Prokaryotic type
Helix-turn-helix
Other families
FCL38_20005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
HTH_8
AAA_5
HTH_30
HTH_23
HTH_7
AAA_2
HTH_Tnp_ISL3
Mg_chelatase
IclR_C
GcrA
HTH_1
HTH_11
HTH_22
HTH_AraC
HTH_20
AAA_7
HTH_28
AAA
HTH_50
HTH_26
Motif
Other DBs
NCBI-ProteinID:
QCP12455
LinkDB
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Position
complement(4796085..4798598)
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AA seq
837 aa
AA seq
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MANAGRMASARHGHQRPGRVARVTRFSRNMGGLLGFLARHGGGRALAQGHAHGTCQRHAG
RAPREMFKIRPAGVRHCPASVATAPCRCRTAVHIFVISLFIFVRQRTIVNTRATRRQQPR
QDADAGTASGEGDSMSDCALAHVRRVRSIVQGRDGSEATGPSNAITRSWIRCLHDYQLDP
GRREEPEVVDAAELAERRERLAGVQAVAKVEMANLYQQLAGSGYAIVLTDAAGVLLNYFG
DPGFTHAASRSGLMPGAVWSERAQGTNGMGTCLVERRPVTVHQDEHYLVRHIGLSCAGAP
IFDHEGEIVAALDASGESRLAQQHTLALVTMSVQMIENRVFLDRFRHDYILRFHNRPEFI
GTLSEGAIALDPAGKVLAATRCALFQLGFTAPADIVGRDITELFNSSFPGLVDSTVRKAF
HAVPIFGLRNGARFYSVMLPPVRVTSPAGRQAAVPATQAPSPLERVHFGDAAMAANVRIA
TRVCERNVAIMLVGETGTGKEVFAQALHRSGPRAGKPFVAINCAAIPETLIESELFGYRA
GAFTGASKEGQQGKLYQANGGTLFLDEIGDMPYPLQARLLRVLEERTIVPLGGGAPLPLD
IQVTSATHCDLQQMIADGTFREDLFYRLQGITLRLPPLRERTDLRALISLIVSEESDDGA
PLSLDEMLLAALERQRWPGNLRQLRHLLRAMIALRESDHLTVHDLPPEYRTGIVAPEVPA
RDSGEAAANTPDPGLHGAGPLAAGLPLDDLLGAESHAPESHGTDPLAPDPLATEPDGLDS
YALNPLEHAERDALLRELQRHGWNISTVARQLHISRNTLYRKVQRLHIRHPGKAVPC
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgcgggcaggatggccagcgcgaggcatggccaccagcggccgggccgcgtg
gcacgggtgacacggttcagcaggaacatggggggtctccttggttttttggcccggcac
ggtggtggacgagcactagcccagggacacgcgcatggaacgtgccagcggcacgcaggg
cgcgcgccgcgcgaaatgttcaaaatcagaccagccggggtgcgccactgtcccgcatcc
gtggcaacggcaccgtgcaggtgtcgcacggctgtccacatttttgtaatttccttattt
atttttgtacggcagcgtactatcgtgaacacacgcgcaacgcgtagacaacagccgcgg
caggatgccgatgccggcaccgccagcggcgaaggagacagcatgtccgattgtgccctg
gcccatgtccggcgggtgcgttcgatcgtccagggccgcgacggctccgaggcgaccggc
cccagcaacgccattacccgttcgtggatccgttgcctgcacgattaccagctcgacccc
ggccggcgcgaggagccggaggtggtcgatgcggccgaactggccgagcggcgcgagcgg
ctggcgggcgtgcaggccgtcgccaaggtcgagatggccaacctgtaccagcagctggcc
ggttcgggctacgcgatcgtgctgaccgacgccgccggcgtgctgctcaattatttcggc
gaccccggctttacccacgcggcatcccggtcgggcctgatgcccggcgcggtatggagc
gaacgggcgcagggcaccaacggcatgggcacctgcctggtcgagcgccggcccgtcacc
gtccaccaggacgagcattacctggtccgccacatcggcctcagctgtgccggcgccccc
atcttcgaccatgaaggcgaaatcgtcgcggcgctcgatgcgtccggcgagtcgcgcctg
gcgcagcagcacacgctggcgctggtcacgatgtccgtgcagatgatcgagaaccgcgtc
ttcctcgaccgcttccggcacgactacatcctgcggttccataaccgccccgagttcatc
ggcacgctgagcgagggggcgatcgcgctggaccccgccggcaaggtgctggccgccacc
cgttgcgcgctgttccagctgggctttacggcgccggcggacatcgtcggccgcgacatc
acggaactgttcaacagttccttcccgggcctggtggacagtacggtacgcaaggcgttc
cacgcggtgccgatcttcggcctgcgcaatggcgcccggttctacagcgtgatgctgccg
ccggtgcgcgtgacgtcgcccgccgggaggcaagcggccgtgccggcgacgcaagcgccg
tcgccattggagcgcgtgcatttcggcgacgcggccatggccgccaacgtgcgcatcgcc
acccgcgtgtgcgagcgcaacgtggcgatcatgctggtcggggaaacgggcacgggcaag
gaagtcttcgcccaggcgctgcaccggtccggaccgcgcgccggcaagccgttcgtggcg
atcaactgcgcggccattccggaaacactgatcgaaagcgaactgttcggataccgggct
ggcgccttcacgggcgccagcaaggaaggccagcaaggcaagctgtaccaggccaatggc
ggcacgctgttcctcgacgagatcggcgacatgccttatcccttgcaggcccggctgctg
cgcgtgctcgaagagcgcaccatcgtgccgctgggcggcggtgccccgttgccgctggat
atccaggtgaccagcgccacgcactgcgacctgcagcagatgatcgccgacggcacgttc
cgcgaagacctgttctaccgcctgcagggcatcacgctgcggctgccgcccctgcgcgaa
cgcaccgacttgcgggccctcatcagcctgatcgtcagcgaggaaagcgatgacggcgcg
ccgctgtcgctcgacgaaatgctgctggccgcgctggaacggcagcgctggccgggcaac
ctgcgccagttgcggcacctgctgcgcgcgatgatcgcgctgcgcgaatcggatcacctg
acggtgcacgacctgccgccggagtaccgcaccggtatcgtggcgccggaagtccccgcg
cgggacagcggagaggcagcggcgaacacgcccgatcccggcctgcacggcgctggcccg
ctggccgccggcctgcccctggacgatttgcttggcgccgaatcacatgcccctgaatca
catggcaccgatccgcttgcgcctgatccacttgccactgaaccggatggcctggattcg
tacgccctgaacccgctggaacatgccgaacgcgatgccttgctgcgcgagcttcagcgg
cacggctggaacatttccacggtggcgcggcagctccacatcagccgcaacacgctgtat
cgcaaggtgcagcggctgcatatccgtcatcccggcaaggccgtgccgtgctga
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