Pseudoduganella umbonata: FCL38_27170
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Entry
FCL38_27170 CDS
T06138
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
mum
Pseudoduganella umbonata
Pathway
mum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
FCL38_27170 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mum03400
]
FCL38_27170 (sbcB)
Enzymes [BR:
mum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
FCL38_27170 (sbcB)
DNA repair and recombination proteins [BR:
mum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
FCL38_27170 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FCL38_27170 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FCL38_27170 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
TPR_25
Motif
Other DBs
NCBI-ProteinID:
QCP13698
LinkDB
All DBs
Position
complement(6470421..6471866)
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AA seq
481 aa
AA seq
DB search
MSNHTFLWHDYETFGAVPRRDRPAQFAAIRTDADLNEIGEPVMLYCKPADDYLPDPQSCL
ITGITPQHALREGVPEHRFAATILELFAEPGTIGVGYNTIRFDDEFTRFLFWRNLIDPYA
REWQNGCGRWDLLDVVRMCHALRPDGIEWPTGDNGKISFKLELLTSVNNLTHDAAHDALS
DVRATIALARLIRQKQPRLWEFCLALRDKGRAADEMGLHLARELRKPFLHVSGMFPVERG
CLALVWPLGTHPTNKNEVLVWDCSHDPRELFTLDAETIRTRLFSRADSLPEGMTRLPIKS
VHLNKSPMLVGNLKTLSADMAQRWGIDVELALAHAQYAASGPDLSALWEQVFHRPPAEPA
DVDEDLYGGFIGKEDRRLLDSLRREPPARLATMSPHFQDDRLAELLFRYRARNFPDTLSE
QEQEHWAQHRAARLLEGAGGARSLDQLFGELETLAQTADERAEGILGELYDYAEMIVPQD
F
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaccacacctttctctggcacgactacgaaacgttcggggccgtgccacgccgc
gatcgtcccgcgcaatttgccgccattcgcaccgacgccgacctgaacgagatcggcgag
ccggtcatgctctactgcaagccggcggacgattacctgcccgacccgcagtcctgcctg
atcaccggcatcacgccccagcacgccttgcgcgaaggcgtacccgaacaccggtttgcc
gccaccatcctagaactctttgccgaacccggcacgatcggcgtcggctacaacacgatc
cgcttcgacgacgagttcacccgcttcctgttctggcgcaacctgatcgatccctatgcg
cgcgagtggcaaaacggctgcggccgctgggatttgctcgacgtggtgcgcatgtgccac
gcgttgcggcctgatggcatcgagtggcctacaggcgataacggcaagatcagcttcaaa
cttgaattattgacatcagtcaacaatctgacgcacgacgcggcgcacgacgcgctgtcc
gacgtgcgtgccacgatcgcgctggcacggctgatccggcagaagcagccgcgcctgtgg
gagttttgcctggcgctgcgcgacaaggggcgcgcggcggacgagatgggcctgcacctg
gcgcgcgagctgcgcaagccgttcctgcatgtgtccggcatgttcccggtggaacggggc
tgcctggcgctggtgtggccgctgggcacgcatccgacgaacaagaacgaggtgctggtc
tgggattgcagccatgacccgcgcgaattgttcacgctggacgcggaaaccatccgcacc
aggctgttcagccgggccgacagcttgcccgaaggcatgacgcgcctgcccatcaagagc
gtgcacctgaacaagtcgccgatgctggtgggaaatctgaaaacgctgagcgcggacatg
gcgcagcgctggggcatcgacgtggaactggcgctcgcgcatgcccaatacgcggccagc
ggccccgatctgtcggcgctctgggaacaggtattccaccggccgccggcggaaccggcc
gatgtcgacgaggatctatatggcggcttcatcggcaaggaagaccgccggctgctcgac
tcgctgcgccgcgaaccgcccgccaggctggccaccatgtcgccgcatttccaggacgat
cgactggccgagctgctgttccgttaccgcgcccgcaatttcccggatacgctgtcggaa
caggaacaagaacactgggcgcagcaccgcgccgcgcggctgctggaaggcgccggcggc
gcgcgcagcctcgaccagctgttcggcgagctcgaaacactggcgcagacggccgacgag
cgtgccgagggcatcctcggcgagctgtacgactacgccgaaatgatcgtgccgcaggac
ttttaa
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