Meriones unguiculatus (Mongolian gerbil): 110545089
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Entry
110545089 CDS
T05884
Symbol
Col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
mun
Meriones unguiculatus (Mongolian gerbil)
Pathway
mun04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mun00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
110545089 (Col18a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mun04147
]
110545089 (Col18a1)
00535 Proteoglycans [BR:
mun00535
]
110545089 (Col18a1)
00536 Glycosaminoglycan binding proteins [BR:
mun00536
]
110545089 (Col18a1)
Exosome [BR:
mun04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110545089 (Col18a1)
Proteoglycans [BR:
mun00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
110545089 (Col18a1)
Glycosaminoglycan binding proteins [BR:
mun00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110545089 (Col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
110545089
NCBI-ProteinID:
XP_021486618
LinkDB
All DBs
Position
16:9058945..9157985
Genome browser
AA seq
1787 aa
AA seq
DB search
MAPDPSRRLCLLLLLLFCCLVPARADGNSLNPLNPLNPLNPLNPLGWLWSPKTEDSLDTP
DSQPQISSPVQSTENPTTHLVPQDGLTEQQMTPANPKLPPEDQEAVQRGTPATPAIPILP
SASAASPDTKEENVAGVGAKILNVAEGIRSFVQLWDEDATTENSTSTDASAASVPTVHLT
PAELSSGPQESETTLWPSSGVPSSPDVQTTEAGTPAAPTQPPPSLSSLQEPLGRPSAPTG
RRVLSSARIRAPPWGSQDPPRQPQHLEEEGLLPTTSRSSQQPGHSDVHPDIHRHIPALLP
LVTGPLVTGPLVTASLRVHRFLSVPSSDPSAQISQVAALPGFPGAWVSHVATPPGPELSN
DSALLGTGSLTSTSRCLPLPPALTICGRLGIGHFWLPNHVQHTNSEEVEAAAQAWGRLLY
TSCHPFLAWFFCLLLAPSCGPGPPPALPPCRQFCEALEDACWTYLDGGRLPVICASLPSQ
EDGYCVFIGPAAENIAEEVGLLQLLGDPLPQQISQINDPDVGAAYVFGPDSNSGQVARYH
FPKLFFHDFSLLFHVQPATKAAGVLFAITDAAQLVVSLGVKLSAVHDGHQNISLLYTESG
VSQTQTGASFRLPAFVGQWTHFALSVDGGSVALYIDCEEFQRVPFARSPQGLELEHGSGL
FVGQAGAADPDKFQGMIAELKVRSTPRVSPVHCLDEDDDDEDRASGDFGSGFEESSKTHR
EEHTPLPPRLPQPPPVTSPPLAGGSITEDYRTEETEEETMVNSIGAETLPGTDSSGAGDE
SVQNHGGGLLKGGLKGQKGEPGARGPPGPAGPQGPAGPVVQSPSVQPVPGAQGPPGPQGP
PGKDGAPGRDGQPGDPGEDGRPGDTGPQGFPGTPGDVGPKGEKGDPGMGPRGPPGPPGPP
GPSFRQDKLTFIDMEGSGFSGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSYAPG
PAGLPGVPGKEGPPGFPGPPGPPGPPGKEGPPGVAGQKGSVGDVGIPGPKGSKGDLGPVG
VPGKPGLAGPSGPAGPPGPPGPPGPPGPPGPGFAAGFDDMEGSGIPFWSTARSSDGPQGP
PGLPGLKGDPGMTGPPGAKGEVGADGSQGMPGPPGREGAAGPPGPKGEKGSQGEKGNPGK
DGVGQPGLPGPPGPPGPVVYVSTEDRAVVTTPGPEGKPGYAGFPGPAGPKGDLGSKGERG
LPGPKGEKGEPGAFFSPDGRALSHVQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRP
GTNGLKGEKGEPGDASLGFSMRGMPGPPGPPGPPGPPGMPIYDSNAFVESGRPGLPGQQG
AQGPSGPKGDKGDVGPPGPPGQFPVDLFHLGAELKGDKGDRGDAGQKGERGEPGAAGGGF
FSSSVPGPPGPPGPPGYPGIPGLKGESIRGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGP
PSFPGPHRQTVSVPGPPGPPGPPGPPGAMGASAGQVRIWATYQTMLDKVREVPEGWLIFV
AEREELYVRVRNGFRKVLLEARTALPDGTGNEVAALQPPLVQLHEGSPYTRREHSYSTAR
PWRADAILANPPRLPDPQPYPGVPHHHGSYVYLPPVHPTILPAHNHQDFQPVLHLVALNS
PLSGGMRGIRGADFQCFQQARAVRLSGTYRAFLSSRLQDLYSIVRRADRGSVPIVNLKDE
VLSPSWDALFSGTQGQLQPGARIFSFDGRDVLRHPAWPQKSVWHGSDPSGRRLMESYCET
WRTEATGATGQASSLLSGRLLEQKAASCQNTYIVLCIENSFMTSFSK
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcagacgcctctgcctgctgctgctgctgctcttctgctgcctt
gtgcctgccagggctgatgggaattccctgaatcccctgaatcccctgaatcctctgaat
cctctgaatcctctggggtggctgtggtcccccaagaccgaggattccttggacacacca
gactcccagccccagatcagttcacctgtgcagtccacagagaaccccaccactcacctg
gtcccccaggatggcctcacagaacaacagatgactcctgctaaccccaagctgcccccg
gaggatcaggaagccgtccagagggggacccctgcaaccccagccatccccatcctgccg
tcggcctctgctgcgagcccggacacgaaggaggagaatgttgccggcgttggagccaag
attctgaatgtggctgagggcattcgaagcttcgtccagctgtgggatgaggatgccact
actgagaactccaccagcacagatgcctcagctgcctcagtccctacagtccacctcact
cctgctgagctctccagtggtccccaggagagtgagaccactctctggccaagcagtggt
gttccaagttctccagatgttcagacaaccgaggctggcacgccggctgcacccacccag
ccacctccctccttgagcagcctccaggaacctctgggaagaccctcggcacccacaggt
agacgggttctctcttctgcacgaatcagggctcctccctgggggagccaggaccccccc
aggcagccccagcatctggaggaggaaggactcctccctacgacatccaggtccagccag
cagcccggacactctgatgtccatcctgacatccacaggcacatacctgctctgcttccc
ctggtgacgggtcccttggtgacgggtcctctggtgacggcttctctgagggtgcaccgt
ttcctctctgttccttcctctgacccctcagcccaaatctctcaagtagcggctttgccc
gggttccctggtgcttgggtttcccacgtggctacccctccagggcctgagctttccaat
gactctgcactgctgggaactggctctctgacctccaccagccgatgcctgcccctgccg
cccgctctgaccatctgcggccgcctaggtatcggacacttctggctgcctaatcatgta
cagcacacaaacagcgaggaggtagaggccgctgcgcaggcgtgggggcggctcctttat
acaagctgccatcccttccttgcctggttcttctgtctgctgctggccccctcctgtggc
ccaggcccaccacctgccctgccaccctgccgtcagttctgtgaggccctggaagatgcg
tgctggacctacctagacgggggcaggctgcctgtcatctgtgcctctctcccctctcag
gaggacgggtactgtgtgttcattgggccagccgcagagaatattgctgaggaggtgggg
ctcttgcagctccttggggaccctctgccccagcaaatctcccaaatcaacgaccctgat
gtcggggcagcgtacgtctttggaccggactccaacagcggccaggtggcgcggtatcac
ttccctaaactgttcttccatgacttttcactgctgtttcacgttcagccagccaccaag
gctgcgggggtgctgtttgccatcacagatgccgcccagctggtggtctcgctgggtgtg
aagctctcggcggttcacgatggacaccagaacatctcactgctctacacagagtctggt
gtcagccagacccagacgggtgccagcttccgcctacctgcgtttgtcggccagtggaca
cactttgcgctcagcgtggatggaggctccgtggctctctacatagactgtgaagagttc
cagagagtaccgtttgctcggtccccacagggtctggagctagaacatggctccggcctc
tttgtgggtcaggctggagcagcagatcctgacaagttccaggggatgatcgcggagctg
aaggtacgcagcaccccccgggtgagccctgtgcactgcttggatgaagatgatgatgat
gaagacagggcatctggagattttggaagcggctttgaagaaagcagcaagacacacagg
gaggagcatacacctctgccaccaagactcccccagccaccccctgtcacttccccgccc
ttggccggaggcagcatcacagaagattacagaacagaagaaacagaggaagaaaccatg
gtcaattctataggagctgagacccttcctggcacagactcaagtggtgcaggggatgag
agtgtccagaaccatggaggtggcttgttaaagggaggtctgaaaggacaaaagggagag
ccaggtgctcggggcccgcctggcccagctgggccccagggtcctgcaggcccggtggta
cagagccccagtgtacaacctgtcccgggagcacaaggacccccgggacctcaggggcca
ccggggaaggatggcgcgccaggaagggatggccaaccgggtgaccccggtgaagacggg
agaccgggtgacactggacctcaaggctttccagggaccccaggtgacgtgggccccaag
ggtgagaagggagatcctggtatggggcctcgaggacctccaggacctccagggcctcca
ggaccctccttcagacaggacaagctgaccttcatcgacatggagggatcaggcttcagt
ggagacctggagagcctcagaggcccacgaggcttccctggccccccaggaccccctggt
gtcccaggactgcctggtgagccagggcgctttggggtcaacagctcctacgctccagga
cctgcaggccttcctggtgtaccaggaaaggaagggcccccaggatttcctggtcccccg
ggacctccaggtcctccaggcaaagagggcccaccaggagtggccggccagaaaggcagt
gtcggcgatgtgggcatcccaggacccaaggggagcaaaggggaccttgggcctgtcggt
gtacctggaaagcctggcttggctggacccagtgggccagctggacctccaggaccccca
ggacccccagggcctccaggaccaccaggaccaggatttgctgctggatttgatgacatg
gaaggctctggaatacccttctggtcaacagcccgaagctccgatggaccgcagggaccc
cccggattgccaggactcaagggggatcctggaatgacagggccacctggagccaaggga
gaagtcggtgcagatggatcccagggcatgcctggccccccaggaagagagggtgcagct
gggcccccggggccaaaaggagagaaagggagccagggagaaaagggaaacccaggaaaa
gatggagtggggcagccaggcctccctggacccccaggacctccagggccggtggtctat
gtgtcgactgaggatagagcagtagtgaccacgccaggacctgagggcaagccagggtat
gcaggctttcccggacctgctggaccgaagggtgatctgggttccaaaggcgagcggggt
cttccagggcctaagggtgaaaagggagaaccaggcgccttctttagccctgacggcaga
gccctgagccacgtccagaaaggagccaagggagagccaggcttccgaggacccccgggt
ccttatgggcgacctggacacaagggagaaatcggcttccccggacggccgggtcgcccc
ggaactaatggattaaagggagagaaaggggagcctggagatgccagcctcgggttcagc
atgagaggaatgcctgggccccctgggcctccgggaccccccggccctcctgggatgccc
atctatgacagcaatgcatttgtggagtctggccgacctggactaccaggacagcaaggt
gcgcaggggccttcaggaccaaagggtgacaaaggagatgtgggcccacctgggccacca
gggcagttccccgttgacctcttccacctgggagcggaattgaagggggacaagggggac
cgaggggacgccggacagaaaggagagcggggagaacctggcgctgccggtggaggattc
ttcagctcaagtgtacctggcccacccgggccccctggcccgcctggttaccccgggatt
ccgggtctgaagggagagagcatccggggcccaccaggccctcctggccctcagggacct
cctggcattggctatgaggggcgccagggccccccaggccccccaggacctccaggaccc
ccctcattccctggccctcatagacagactgtcagtgttcctggtcctccgggcccaccc
ggccccccagggcccccgggagccatgggcgcctctgctgggcaggtgaggatctgggcc
acctaccagaccatgctggacaaggtgcgtgaggtgcccgagggctggctcatctttgtg
gccgagagggaagagctctacgtacgcgttagaaatggcttccggaaggtgctgctggag
gcccggaccgcactcccagatggcacgggcaacgaggtcgctgccctgcagcccccacta
gtgcagcttcacgagggcagtccgtatacccggcgggaacactcctactccacggcgcgg
ccctggcgggcagatgccattttggccaacccaccacggctgccagacccgcagccttac
cccggggttccgcaccaccacggctcctacgtgtacctgccgcccgtccaccccaccatc
ttgcctgcccacaatcaccaggacttccagccagtgctccacctggtggcactgaacagc
ccgctgtcgggtggcatgcgtggcatccgcggcgccgacttccagtgcttccagcaggcc
cgagccgtgaggctctctggcacctaccgtgccttcctctcctccaggctgcaggatctc
tatagcattgttcgccgtgctgaccgtgggtcggtgcccatcgtcaacctgaaggacgag
gtgctgtctcccagttgggatgccctgttttctggcacccagggtcaactgcagcctggg
gcccgcatcttctcttttgacggcagagatgtcctgagacacccggcctggcctcagaag
agtgtatggcatggctcagaccccagcgggcgcaggctgatggagagctactgtgagacg
tggcggacggaagcgaccggggccacgggtcaagcctcctcactgctctcaggcaggctc
ctggaacagaaagctgcgagctgccagaacacctacatcgtcctgtgcattgagaatagc
ttcatgacttctttctctaagtag
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