Meriones unguiculatus (Mongolian gerbil): 110554222
Help
Entry
110554222 CDS
T05884
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mun
Meriones unguiculatus (Mongolian gerbil)
Pathway
mun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mun00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110554222 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mun03021
]
110554222 (Pcf11)
03019 Messenger RNA biogenesis [BR:
mun03019
]
110554222 (Pcf11)
Transcription machinery [BR:
mun03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110554222 (Pcf11)
Messenger RNA biogenesis [BR:
mun03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110554222 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
110554222
NCBI-ProteinID:
XP_021502381
LinkDB
All DBs
Position
14:complement(78337331..78362913)
Genome browser
AA seq
1682 aa
AA seq
DB search
MSEPTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPDEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETANLGPGSAPSKLHVSQIPAMAIKTPHQVPVQPDKSRPGPPLQIQDLKGTNRDPRLN
RMSQHSSHGKEQSHRKEFVMNTLNQSDTKTGKTVPSEKLNSSKQEKSKSGERITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKHLQDKGEGKDEDV
KEKRKTEKKDKDEHMKSSEHRLIGSRSKIINGIVQKQDMVTEELEKQGTKPGRSSTRKRS
RSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLAPKGGKMRQSGLKQSHMEEFPLPSRE
ERNVKRSTKQDVRDPRRLKKMDEDRPQETASQHSMKSGAEPKENIENWQSSKSAKRWKSG
WEENKSLQQGDEHSKPPHLRHRESWSSTKGILSPRAPKQHRLSVDANLQIPKELTLASKR
ELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPSEENKGGLKKKPLL
SDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASRNS
GAQFDRKEQFSERARRLSPVSGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFNDRF
PLKRPRYEDSDKPFVDGPASRFAGLDTNQRLTALAEDRPLFDGPGRPSVTRDGPAKMIFE
GPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPMRFEGPQGQLGGGCPLRFEGPPGPVGTP
LRFEGPIGQGGGGGGFRFEGSPSLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLR
FEGPHGQPVGSLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQ
GVGMRFEGPHGQSVAGLRFEGHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGP
VPGGGLRIEGPLGQGGPRFEGCHSLRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQ
RFDGPPGQQVQPRFDGVPQRFDGPQHQQTSRFDIPLGLQGTRFDNHPSQRLESVSFNQTG
PYNDPPGNAFNVPSQGLQFQRHEQIFDTPQGPNFNGPHGPGNQNFPNPLNRASGHYFDEK
NLQSSQFGNFGNLPTPMSVGNIQASQQVLTGVAQPVAFGQGQFLPVHHPQNPGPFIQNPS
GLPKPYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNETATQPPQEEEEDQNEDQ
DVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEK
DVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVP
AGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPS
PSKTPVENPLNIMLNIVKNELQEPCESPKVKEEQIDAPPACSEESVATPTEIKTESDTVE
SV
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagccgacgccggccgaggccggggctgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcgctggaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtatttgaaaaggtggatgaaaatactagaaaaagtttatttaaattgcgttcc
acatgggatgaaatattccctttgaagaaactttatgccttggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctgccccctaatgtgaatacatctagcatccat
gtgaatcccaaatttttaaataaatcgcctgacgagccttcgacacctggcacagtggtc
agttcccccagtatctccactcctccgattgtacctgatatacaaaagaatcttactcaa
gaacaactgataaggcaacagttactggcaaaacaaaaacagttgttagaacttcagcaa
aaaaagctggagcttgagttagagcaagctaaggcacagctggcagtatctcttagtgtt
cagcaggagacagccaacttgggtcctgggtcagcaccgtctaaattacatgtttcacaa
attcctgctatggccattaaaactccccatcaggttccagtgcaacctgacaaaagccga
ccgggtccgcccttacaaattcaagacttgaaaggaactaaccgagatccccgtcttaac
aggatgagccaacattcttcccatggcaaagagcagagtcataggaaagaatttgtaatg
aacacattaaaccagtctgatactaaaacaggtaaaactgtaccctctgaaaaactaaat
tcatccaagcaagaaaaaagtaaatcaggtgaaagaataaccaagaaagaacttgaccag
ttagactctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaagacttgaaaaatcaagaatctgaaagtatgaggttatctgatatgaataag
agagatccacgtttaaaaaagcatcttcaggataaaggtgagggcaaagatgaagatgta
aaagaaaagagaaaaacagaaaagaaggataaagatgagcacatgaaatcatctgaacac
agactgattggaagtagaagtaaaatcataaatggcattgttcaaaagcaagacatggtt
acagaagaattggaaaaacaggggacaaaaccagggagatcaagtactagaaagagatca
agatccaggtcacctaagtctcggtcaccaattatacattccccaaagagaagagataga
cggtcacccaaacgaaggcaaagaagtatgtctccaactttggcacccaaaggtggaaag
atgcggcagtcaggacttaaacagtcacatatggaagagttcccactaccttctagggaa
gaaagaaatgtaaagagaagtaccaagcaggatgttcgagatcctagacgactgaaaaag
atggatgaggaccgaccacaagaaactgcaagtcaacattctatgaagtcaggtgctgaa
ccaaaggagaatatagagaattggcaaagctctaagtctgccaaaagatggaaatctggt
tgggaagaaaataaaagcttacaacagggtgatgaacatagtaaacctcctcatctaagg
catagggagagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcagcat
cgattaagtgtagatgccaatcttcaaattcctaaagagttaactcttgcaagcaaaaga
gaattacttcaaaagacgagtgaacgtttagcttctggtgaaattacacaggatgagttc
cttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacatagatgc
aatgtacgggatagtccttcagaagaaaataaaggtggattaaaaaagaaacctctctta
tctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacaggttcag
cattcatttccaagacttgatctcttagatcctgatatttttgactaccctttgactgat
gccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtaggaatagt
ggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttctcctgta
tctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaagacatgac
gagcaagtctctgctaaaggtgtacgagaggagcagagatcaccattcaatgatcgtttt
ccgcttaagcgacctagatatgaagattcagataaaccatttgtagatggcccagcctca
agatttgctggccttgatacaaatcagcgacttacagctttagctgaagaccgaccatta
tttgatggacctggtaggccatctgtgacaagagatggcccagccaagatgatttttgaa
ggacctaataaattaagccctagaattgatggacctcctacaccaggttctcttcggttc
gatgggtcaccaggacaaatggggggaggaggccctatgagatttgaaggaccgcaaggt
cagttaggaggtgggtgccctttgagatttgaaggtcctccaggaccagtaggaacacct
ctgcgctttgaagggccaattggtcaaggaggaggaggaggtggttttcgatttgaaggt
tcacctagtctgaggtttgagggatctgcaggtggtttgcgatttgaaggaccagggggt
cagcctgtgggtggtctcaggtttgaaggacatcgtggtcaacctgtgggtggtctgagg
tttgagggacctcatggacagcctgtgggcagtcttagatttgataatcctcgaggtcag
cctgtaggtggacttagatttgaagggggtcatggtccatcaggggctgcaattaggttt
gatgggcctcatggtcagccaggtggtggtatcagatttgagggccctttgctacagcaa
ggagttggaatgaggtttgagggtccccatgggcagtctgtagctggtctgagatttgaa
ggacataatcaactaggtggaaaccttaggtttgagggaccacatggtcaaccaggagtc
gggatcaggtttgaaggacctttagttcaacaaggaggtggaatgaggtttgagggtcct
gtaccaggaggtggcctaagaattgaagggcctctgggtcaaggtggtcctagatttgaa
ggttgtcactctttaaggtttgatgggcagccaggtcagccatcactcttgccaagattt
gatggattacatggccagccaggtcctagatttgaaagaactggtcagccaggtccacag
agatttgatgggccacctggacagcaggttcagccgagatttgatggtgtacctcaaaga
tttgatgggccacaacaccagcaaacatcaagatttgatattcctcttggtctacaaggc
acccgatttgacaatcatccttcacaaaggcttgaatcggtatctttcaatcagaccggc
ccatataatgatccacctggcaatgcttttaatgtcccatctcaaggactacagttccaa
agacatgaacaaatatttgacacacctcaaggaccaaactttaatggaccacatggccct
ggaaaccagaatttcccaaatccccttaacagagcttctggacactattttgatgaaaag
aatcttcagagttctcagtttggaaactttggcaatttacctactccgatgtcagtagga
aatattcaggcatctcaacaggttctgactggtgttgctcagccagtagcatttggccaa
ggacagtttttaccagttcatcatccacagaatcctggaccttttattcaaaatccttca
ggtcttcctaagccatatcctgataatcatctcagtcaggtggatgtaaatgaattgttt
tcaaaactgctaaaaacaggaattctcaaattgtcacagcctgattcagctacaacacag
gtaaatgagactgctactcagcctccccaagaagaggaggaggatcagaatgaagatcaa
gatgtcccagatcttacaaatttcacaattgaagaattgaagcagcgttatgacagtgtt
ataaaccggctgtatactgggattcagtgttactcttgtggaatgcggttcacaacatca
cagacagatgtttatgcagatcacttggactggcattatcggcaaaacagaactgagaaa
gatgttagcagaaaagtcactcatcgacgttggtactatagtctaacagactggatagaa
tttgaagaaatagctgatctggaagaacgtgcaaaaagccagttttttgaaaaggttcat
gaagaggttgtccttaaaacccaggaggctgctaaagaaaaggagttccaaagtgtacct
gctggaccagctggagcagttgagagttgtgaaatctgtcaagaacaattcgaacagtac
tgggatgaagaggaggaggaatggcacttaaaaaatgctattagagtggacggaaagatt
tatcatccatcatgttacgaagattatcaaaatacatcttcttttgattgtacaccatct
cccagcaagacaccagttgaaaaccctttgaacattatgttgaacattgtcaaaaacgaa
ttgcaagaaccctgtgaaagtcccaaagttaaggaagaacaaattgatgctccgccagct
tgttcagaagaaagtgtagcaacacccactgaaattaaaacagaaagtgatacagttgag
tcagtttaa
DBGET
integrated database retrieval system
