Meriones unguiculatus (Mongolian gerbil): 110558761
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Entry
110558761 CDS
T05884
Symbol
Mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mun
Meriones unguiculatus (Mongolian gerbil)
Pathway
mun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110558761 (Mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mun03019
]
110558761 (Mtrex)
03041 Spliceosome [BR:
mun03041
]
110558761 (Mtrex)
03009 Ribosome biogenesis [BR:
mun03009
]
110558761 (Mtrex)
03016 Transfer RNA biogenesis [BR:
mun03016
]
110558761 (Mtrex)
Enzymes [BR:
mun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110558761 (Mtrex)
Messenger RNA biogenesis [BR:
mun03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110558761 (Mtrex)
Spliceosome [BR:
mun03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110558761 (Mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
110558761 (Mtrex)
Ribosome biogenesis [BR:
mun03009
]
Eukaryotic type
Pre-60S particles
Helicases
110558761 (Mtrex)
Transfer RNA biogenesis [BR:
mun03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110558761 (Mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
DUF2486
Motif
Other DBs
NCBI-GeneID:
110558761
NCBI-ProteinID:
XP_060241706
LinkDB
All DBs
Position
6:complement(87236125..87300973)
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTSAAGAKKDKGKEKEKWKGPPGSADKAGKRLDAKLQSESSTSG
KNKREIDVEGTDEPIFGKKPRLEDSVNEDLSLADLMPKVKVQSVETVEGCTHEVALPADE
DYVPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPTSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISTVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAVDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggacgagctttttagcgttttcgaggatgattcgaccagcgca
gcaggagccaagaaagacaaaggaaaggagaaagagaaatggaagggaccaccagggtcg
gcggacaaggccgggaaacgactggatgccaaattacaatcagaatcatccactagtggg
aaaaacaagagagagatagatgttgaaggcacagatgaacctatttttggcaagaagccc
aggctagaagactcagttaatgaagacttaagcttggcggacctgatgcccaaagtcaag
gtacagtcagttgaaacagttgaaggctgtacacatgaggttgctcttcctgcagatgag
gattatgtaccacttaaacctcgagttggaaaggcagcaaaggaatacccattcattctt
gatgctttccaaagagaagctattcagtgtgttgataataatcagtctgtgttagtatct
gcccatacatcggcgggaaaaactgtgtgtgctgagtatgctattgcattggctttaagg
gaaaaacagcgtgtaatatttactagcccaattaaggctctgagtaaccagaaataccgt
gaaatgtatgaagagtttcaagatgttggtctgatgactggagatgttactattaatccc
acagcttcttgtcttgttatgactacagagattttgaggagtatgctctatagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtagtatgggaagaaactattattttgcttccagataatgtccactatgtc
tttctttcggctactattccaaatgctcgacagtttgctgaatggatttgccatcttcac
aaacagccctgtcatgtaatttatactgattatcgacccactccattgcaacattacata
tttccagcagggggagatggccttcaccttgtggtcgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtacttcgggatgcaggggatttggccaaaggagac
cagaagggacggaaaggaggaacaaaaggtccatcaaatgtgtttaagattgtgaagatg
attatggaaagaaattttcaacctgtaattatcttcagttttagtaagaaagattgtgaa
gcatatgctcttcagatgactaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagttttcaataatgcaattgactgcttgtctgatgaagataaaaagctccctcag
gttgaacacgttctccctctcctgaagcgggggattggcattcaccacggcggtttactt
cctattttgaaggaaactatagaaattctcttttctgagggattgataaaggccttattt
gccacagagacttttgctatgggaattaacatgccagctagaactgttttatttacaaat
gcccgtaaatacgatggaaaggattttagatggatttcctctggtgagtacattcagatg
tctggtcgtgctggaaggaggggaatggatgacagaggaattgtaattcttatggtagat
gaaaagatgagcccaacgatcggaaaacaactgcttaagggctcagctgatcctctgaat
agtgctttccatctgacctataacatggttctgaacttactacgagtggaagaaatcaat
cctgagtacatgctagaaaaatctttctaccagtttcagcattacagagcaattccagga
gtagtggagaaggtaaagaactcagaagagcagtataataaaatagtaattcccaatgaa
gaaaatgtggtcatctactacaagattagacagcaacttgccaagctgggaaaagagatt
gaagaatatattcataaaccgaaatattgcttaccatttctgcaaccaggtcgtttggta
aaggtgaaaaatgaaggagatgattttggctggggagtggtagtaaatttctcaaaaaag
tcaaatgttaagcctacttctggtgaactggatcccttgtatgtggtggaagtgctcctg
cgctgtagcaaggaaagcttgaaaaattcagctacagaggcagccaagccagcaaagcct
gacgagaagggagagatgcaggttgttccagtcttggtgcatctcctgtctgctatcagc
acagttagactttacatccccaaagaccttcgacccttggacaacagacagagcgtttta
aaatccatacaggaagttcagaagcgttttcctgatggtgttcctttgttagatcccatt
gatgatatgggcattcaagatcaaggactgaaaaaagtcattcaaaaagtagaggctttt
gagcatcgaatgtattcgcatccacttcacaatgatccaaatttggaaacagtgtataca
ctttgtgaaaaaaaagcacagattgcagtagatattaagtctgcaaagagagaactgaag
aaagcaagaactgtactgcaaatggatgagctcaaatgtcgtaagcgcgttctaagacgg
ctaggttttgctacgtcttctgatgtcatagagatgaaaggacgtgtggcttgtgaaata
agcagtgctgacgagctcctcctaacagaaatgatgtttaacgggctcttcaatgacctt
tctgcagagcaggcaaccgcactgttaagctgctttgtgtttcaagagaattctagtgag
atgcccaagttaacagagcagttagctggaccactgcgacaaatgcaggaatgtgctaaa
aggattgcaaaagtttcagcagaagcaaaactggagattgatgaagaaacttacctaagt
tcattcaagcctcacctgatggatgtggtgtatacctgggcaactggggccacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagtataattcgttgtatgaggcgcctg
gaagaactgcttcggcagatgtgtcaagcagcaaaagccattggaaacacggagctggag
aacaagtttgctgaaggaatcaccaaaatcaagagggatattgtatttgctgccagcctc
tacttgtag
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