Meriones unguiculatus (Mongolian gerbil): 110564848
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Entry
110564848 CDS
T05884
Symbol
Rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mun
Meriones unguiculatus (Mongolian gerbil)
Brite
KEGG Orthology (KO) [BR:
mun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mun03016
]
110564848 (Rtcb)
Enzymes [BR:
mun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
110564848 (Rtcb)
Transfer RNA biogenesis [BR:
mun03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
110564848 (Rtcb)
Prokaryotic type
tRNA splicing ligases
110564848 (Rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
110564848
NCBI-ProteinID:
XP_060233792
LinkDB
All DBs
Position
2:91655094..91684791
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctacaacgatgagctgcagttcttggacaagatcaataaaaattgttgg
aggatcaagaagggctttgtgcccaacatgcaggttgaaggagtgttttatgtgaatgat
gctctggaaaagctaatgtttgaggaattaaggaatgcctgtcgaggcggtggtgttggt
ggcttcctgccagccatgaagcagattggcaatgtggcagccctgcctgggattgttcat
cgttctattggacttcctgatgtgcattcaggctatgggtttgccatagggaacatggct
gcctttgatatgaatgaccctgaagcagtagtatccccaggtggtgtcggatttgacatt
aactgcggtgtccgcttgctaagaaccaatttagatgagagtgatgtacagcctgtgaag
gaacaacttgcccaagctatgtttgaccacattcctgttggggtgggatcaaaaggcgtc
atcccaatgaatgccaaagacttagaggaggcattggagatgggtgtggactggtccttg
agagaaggctatgcatgggctgaagacaaggaacattgtgaagaatatggacggatgcta
caagctgacccaaataaggtctctcccagggctaagaaaaggggccttcctcagctgggg
accctgggagcaggcaaccactatgcagaaatccaggttgtagatgagattttcaatgag
tatgctgctaagaaaatgggcatcgaccataagggacaggtgtgtgtgatgatacacagt
ggaagcagaggcttgggccaccaagtagctacagatgcactggtagctatggaaaaggcc
atgaagcgagacaagattatagtcaatgatcggcagttggcttgtgctcggattgcgtcc
ccagagggacaagactatttaaagggaatggctgcagctggcaactatgcctgggttaac
cgctcttctatgactttcttaacccgtcaggcttttgccaaagtcttcaacacaacccct
gatgacctggacctgcatgtgatttatgatgtttctcacaatatcgccaaagtggagcag
catgtggtagacggaaaggaacggacgctgttggtgcacaggaagggatctacccgtgca
ttccctcctcaccaccccctcattgctgttgattaccaactcactggacaaccagtgctt
attggtggcaccatggggacctgtagttatgttctgactggcactgaacaaggcatgact
gagacctttggaacaacctgtcatggggcgggtcgtgcattatctcgagcaaaatcacgc
cgtaatttagatttccaagatgtcttagacaaactggcagatatgggaattgcaatccgt
gttgcttcacccaagctggttatggaagaggctccagagtcctataagaatgtgacagat
gtcgtaaacacctgccatgatgctgggatcagcaagaaggccattaaactgagaccgatt
gctgttattaaaggatag
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